Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3721

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3719 and Pf6N2E2_3720 overlap by 4 nucleotidesPf6N2E2_3720 and Pf6N2E2_3721 are separated by 4 nucleotidesPf6N2E2_3721 and Pf6N2E2_3722 overlap by 4 nucleotides Pf6N2E2_3719 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 4,332,801 to 4,333,226 _3719 Pf6N2E2_3720 - FIG027190: Putative transmembrane protein, at 4,333,223 to 4,333,816 _3720 Pf6N2E2_3721 - FIG021862: membrane protein, exporter, at 4,333,821 to 4,336,139 _3721 Pf6N2E2_3722 - FIG064705: cation/hydrogen antiporter, at 4,336,136 to 4,337,293 _3722 Position (kb) 4333 4334 4335 4336 4337Strain fitness (log2 ratio) -2 -1 0 1 2at 4332.891 kb on + strand, within Pf6N2E2_3719at 4332.891 kb on + strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.892 kb on - strand, within Pf6N2E2_3719at 4332.901 kb on - strand, within Pf6N2E2_3719at 4332.901 kb on - strand, within Pf6N2E2_3719at 4332.948 kb on + strand, within Pf6N2E2_3719at 4332.948 kb on + strand, within Pf6N2E2_3719at 4332.949 kb on - strand, within Pf6N2E2_3719at 4333.741 kb on + strand, within Pf6N2E2_3720at 4333.742 kb on - strand, within Pf6N2E2_3720at 4333.749 kb on + strand, within Pf6N2E2_3720at 4334.376 kb on - strand, within Pf6N2E2_3721at 4334.769 kb on + strand, within Pf6N2E2_3721at 4334.769 kb on + strand, within Pf6N2E2_3721at 4334.769 kb on + strand, within Pf6N2E2_3721at 4334.769 kb on + strand, within Pf6N2E2_3721at 4334.858 kb on + strand, within Pf6N2E2_3721at 4334.858 kb on + strand, within Pf6N2E2_3721at 4334.858 kb on + strand, within Pf6N2E2_3721at 4334.858 kb on + strand, within Pf6N2E2_3721at 4334.864 kb on + strand, within Pf6N2E2_3721at 4334.872 kb on - strand, within Pf6N2E2_3721at 4334.950 kb on - strand, within Pf6N2E2_3721at 4335.034 kb on - strand, within Pf6N2E2_3721at 4335.336 kb on + strand, within Pf6N2E2_3721at 4335.336 kb on + strand, within Pf6N2E2_3721at 4335.337 kb on - strand, within Pf6N2E2_3721at 4335.478 kb on + strand, within Pf6N2E2_3721at 4335.478 kb on + strand, within Pf6N2E2_3721at 4335.479 kb on - strand, within Pf6N2E2_3721at 4335.479 kb on - strand, within Pf6N2E2_3721at 4335.479 kb on - strand, within Pf6N2E2_3721at 4335.649 kb on + strand, within Pf6N2E2_3721at 4335.650 kb on - strand, within Pf6N2E2_3721at 4335.650 kb on - strand, within Pf6N2E2_3721at 4335.909 kb on + strandat 4336.035 kb on - strandat 4336.035 kb on - strandat 4336.268 kb on + strand, within Pf6N2E2_3722at 4336.269 kb on - strand, within Pf6N2E2_3722at 4336.269 kb on - strand, within Pf6N2E2_3722at 4336.269 kb on - strand, within Pf6N2E2_3722at 4336.341 kb on - strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.553 kb on + strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.554 kb on - strand, within Pf6N2E2_3722at 4336.560 kb on - strand, within Pf6N2E2_3722at 4336.560 kb on - strand, within Pf6N2E2_3722at 4336.754 kb on + strand, within Pf6N2E2_3722at 4336.754 kb on + strand, within Pf6N2E2_3722at 4336.754 kb on + strand, within Pf6N2E2_3722at 4336.754 kb on + strand, within Pf6N2E2_3722at 4336.755 kb on - strand, within Pf6N2E2_3722at 4336.908 kb on - strand, within Pf6N2E2_3722at 4336.908 kb on - strand, within Pf6N2E2_3722at 4337.029 kb on - strand, within Pf6N2E2_3722at 4337.029 kb on - strand, within Pf6N2E2_3722at 4337.029 kb on - strand, within Pf6N2E2_3722at 4337.098 kb on + strand, within Pf6N2E2_3722

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,332,891 + Pf6N2E2_3719 0.21 -0.9
4,332,891 + Pf6N2E2_3719 0.21 +0.9
4,332,892 - Pf6N2E2_3719 0.21 -0.8
4,332,892 - Pf6N2E2_3719 0.21 -0.6
4,332,892 - Pf6N2E2_3719 0.21 +0.4
4,332,892 - Pf6N2E2_3719 0.21 +0.3
4,332,901 - Pf6N2E2_3719 0.23 -0.0
4,332,901 - Pf6N2E2_3719 0.23 +0.6
4,332,948 + Pf6N2E2_3719 0.35 -0.9
4,332,948 + Pf6N2E2_3719 0.35 +0.2
4,332,949 - Pf6N2E2_3719 0.35 -0.6
4,333,741 + Pf6N2E2_3720 0.87 -0.7
4,333,742 - Pf6N2E2_3720 0.87 -0.3
4,333,749 + Pf6N2E2_3720 0.89 +0.1
4,334,376 - Pf6N2E2_3721 0.24 -1.7
4,334,769 + Pf6N2E2_3721 0.41 -1.2
4,334,769 + Pf6N2E2_3721 0.41 -2.7
4,334,769 + Pf6N2E2_3721 0.41 -1.1
4,334,769 + Pf6N2E2_3721 0.41 -0.6
4,334,858 + Pf6N2E2_3721 0.45 -1.6
4,334,858 + Pf6N2E2_3721 0.45 -0.5
4,334,858 + Pf6N2E2_3721 0.45 -1.9
4,334,858 + Pf6N2E2_3721 0.45 +0.4
4,334,864 + Pf6N2E2_3721 0.45 -2.2
4,334,872 - Pf6N2E2_3721 0.45 +0.7
4,334,950 - Pf6N2E2_3721 0.49 +0.5
4,335,034 - Pf6N2E2_3721 0.52 -1.2
4,335,336 + Pf6N2E2_3721 0.65 -0.1
4,335,336 + Pf6N2E2_3721 0.65 -0.4
4,335,337 - Pf6N2E2_3721 0.65 +0.1
4,335,478 + Pf6N2E2_3721 0.71 -0.8
4,335,478 + Pf6N2E2_3721 0.71 +0.1
4,335,479 - Pf6N2E2_3721 0.71 +0.8
4,335,479 - Pf6N2E2_3721 0.71 -0.2
4,335,479 - Pf6N2E2_3721 0.71 -0.2
4,335,649 + Pf6N2E2_3721 0.79 +0.1
4,335,650 - Pf6N2E2_3721 0.79 +1.0
4,335,650 - Pf6N2E2_3721 0.79 -1.2
4,335,909 + +1.0
4,336,035 - +0.2
4,336,035 - -0.2
4,336,268 + Pf6N2E2_3722 0.11 -0.6
4,336,269 - Pf6N2E2_3722 0.11 -0.2
4,336,269 - Pf6N2E2_3722 0.11 +0.3
4,336,269 - Pf6N2E2_3722 0.11 +0.6
4,336,341 - Pf6N2E2_3722 0.18 -0.9
4,336,553 + Pf6N2E2_3722 0.36 -0.0
4,336,553 + Pf6N2E2_3722 0.36 +0.4
4,336,553 + Pf6N2E2_3722 0.36 -2.5
4,336,553 + Pf6N2E2_3722 0.36 -0.8
4,336,553 + Pf6N2E2_3722 0.36 -0.0
4,336,553 + Pf6N2E2_3722 0.36 -1.2
4,336,553 + Pf6N2E2_3722 0.36 +0.1
4,336,554 - Pf6N2E2_3722 0.36 +2.0
4,336,554 - Pf6N2E2_3722 0.36 -0.7
4,336,554 - Pf6N2E2_3722 0.36 -0.3
4,336,554 - Pf6N2E2_3722 0.36 -0.3
4,336,554 - Pf6N2E2_3722 0.36 +0.8
4,336,554 - Pf6N2E2_3722 0.36 -0.4
4,336,554 - Pf6N2E2_3722 0.36 -0.2
4,336,554 - Pf6N2E2_3722 0.36 -0.2
4,336,560 - Pf6N2E2_3722 0.37 -0.2
4,336,560 - Pf6N2E2_3722 0.37 -0.4
4,336,754 + Pf6N2E2_3722 0.53 +0.5
4,336,754 + Pf6N2E2_3722 0.53 -0.6
4,336,754 + Pf6N2E2_3722 0.53 +0.5
4,336,754 + Pf6N2E2_3722 0.53 +0.5
4,336,755 - Pf6N2E2_3722 0.53 -1.5
4,336,908 - Pf6N2E2_3722 0.67 -0.2
4,336,908 - Pf6N2E2_3722 0.67 -0.6
4,337,029 - Pf6N2E2_3722 0.77 -1.2
4,337,029 - Pf6N2E2_3722 0.77 -0.3
4,337,029 - Pf6N2E2_3722 0.77 +0.4
4,337,098 + Pf6N2E2_3722 0.83 -0.1

Or see this region's nucleotide sequence