Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3543

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3542 and Pf6N2E2_3543 are separated by 203 nucleotidesPf6N2E2_3543 and Pf6N2E2_3544 are separated by 115 nucleotidesPf6N2E2_3544 and Pf6N2E2_3545 overlap by 4 nucleotides Pf6N2E2_3542 - Outer membrane receptor proteins, mostly Fe transport, at 4,131,257 to 4,133,383 _3542 Pf6N2E2_3543 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 4,133,587 to 4,134,966 _3543 Pf6N2E2_3544 - ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component, at 4,135,082 to 4,135,870 _3544 Pf6N2E2_3545 - ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component, at 4,135,867 to 4,136,814 _3545 Position (kb) 4133 4134 4135Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4132.619 kb on + strand, within Pf6N2E2_3542at 4132.620 kb on - strand, within Pf6N2E2_3542at 4132.655 kb on + strand, within Pf6N2E2_3542at 4132.655 kb on + strand, within Pf6N2E2_3542at 4132.655 kb on + strand, within Pf6N2E2_3542at 4132.655 kb on + strand, within Pf6N2E2_3542at 4132.656 kb on - strand, within Pf6N2E2_3542at 4132.793 kb on + strand, within Pf6N2E2_3542at 4132.829 kb on + strand, within Pf6N2E2_3542at 4132.829 kb on + strand, within Pf6N2E2_3542at 4132.830 kb on - strand, within Pf6N2E2_3542at 4132.830 kb on - strand, within Pf6N2E2_3542at 4132.842 kb on + strand, within Pf6N2E2_3542at 4132.843 kb on - strand, within Pf6N2E2_3542at 4132.843 kb on - strand, within Pf6N2E2_3542at 4132.850 kb on + strand, within Pf6N2E2_3542at 4132.850 kb on + strand, within Pf6N2E2_3542at 4132.850 kb on + strand, within Pf6N2E2_3542at 4132.851 kb on - strand, within Pf6N2E2_3542at 4132.851 kb on - strand, within Pf6N2E2_3542at 4132.851 kb on - strand, within Pf6N2E2_3542at 4132.865 kb on + strand, within Pf6N2E2_3542at 4132.946 kb on + strand, within Pf6N2E2_3542at 4132.946 kb on + strand, within Pf6N2E2_3542at 4132.947 kb on - strand, within Pf6N2E2_3542at 4132.947 kb on - strand, within Pf6N2E2_3542at 4132.947 kb on - strand, within Pf6N2E2_3542at 4132.989 kb on - strand, within Pf6N2E2_3542at 4133.066 kb on + strand, within Pf6N2E2_3542at 4133.066 kb on + strand, within Pf6N2E2_3542at 4133.066 kb on + strand, within Pf6N2E2_3542at 4133.066 kb on + strand, within Pf6N2E2_3542at 4133.267 kb on + strandat 4133.268 kb on - strandat 4133.381 kb on + strandat 4133.381 kb on + strandat 4133.611 kb on + strandat 4133.638 kb on + strandat 4133.639 kb on - strandat 4133.695 kb on + strandat 4133.695 kb on + strandat 4133.695 kb on + strandat 4133.695 kb on + strandat 4133.696 kb on - strandat 4133.696 kb on - strandat 4133.696 kb on - strandat 4133.728 kb on + strand, within Pf6N2E2_3543at 4133.728 kb on + strand, within Pf6N2E2_3543at 4133.728 kb on + strand, within Pf6N2E2_3543at 4133.729 kb on - strand, within Pf6N2E2_3543at 4133.729 kb on - strand, within Pf6N2E2_3543at 4133.830 kb on + strand, within Pf6N2E2_3543at 4133.830 kb on + strand, within Pf6N2E2_3543at 4133.831 kb on - strand, within Pf6N2E2_3543at 4133.831 kb on - strand, within Pf6N2E2_3543at 4134.067 kb on + strand, within Pf6N2E2_3543at 4134.067 kb on + strand, within Pf6N2E2_3543at 4134.068 kb on - strand, within Pf6N2E2_3543at 4134.068 kb on - strand, within Pf6N2E2_3543at 4134.068 kb on - strand, within Pf6N2E2_3543at 4134.242 kb on - strand, within Pf6N2E2_3543at 4134.493 kb on + strand, within Pf6N2E2_3543at 4134.589 kb on + strand, within Pf6N2E2_3543at 4134.589 kb on + strand, within Pf6N2E2_3543at 4134.589 kb on + strand, within Pf6N2E2_3543at 4134.589 kb on + strand, within Pf6N2E2_3543at 4134.589 kb on + strand, within Pf6N2E2_3543at 4134.590 kb on - strand, within Pf6N2E2_3543at 4134.590 kb on - strand, within Pf6N2E2_3543at 4135.002 kb on + strandat 4135.003 kb on - strandat 4135.067 kb on + strandat 4135.068 kb on - strandat 4135.068 kb on - strandat 4135.077 kb on + strandat 4135.077 kb on + strandat 4135.077 kb on + strandat 4135.078 kb on - strandat 4135.078 kb on - strandat 4135.078 kb on - strandat 4135.078 kb on - strandat 4135.078 kb on - strandat 4135.093 kb on - strandat 4135.247 kb on + strand, within Pf6N2E2_3544at 4135.278 kb on + strand, within Pf6N2E2_3544at 4135.278 kb on + strand, within Pf6N2E2_3544at 4135.279 kb on - strand, within Pf6N2E2_3544at 4135.279 kb on - strand, within Pf6N2E2_3544at 4135.415 kb on - strand, within Pf6N2E2_3544at 4135.619 kb on + strand, within Pf6N2E2_3544at 4135.619 kb on + strand, within Pf6N2E2_3544at 4135.620 kb on - strand, within Pf6N2E2_3544at 4135.718 kb on + strand, within Pf6N2E2_3544at 4135.719 kb on - strand, within Pf6N2E2_3544

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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4,132,619 + Pf6N2E2_3542 0.64 +0.5
4,132,620 - Pf6N2E2_3542 0.64 +0.2
4,132,655 + Pf6N2E2_3542 0.66 -0.1
4,132,655 + Pf6N2E2_3542 0.66 +0.4
4,132,655 + Pf6N2E2_3542 0.66 -0.2
4,132,655 + Pf6N2E2_3542 0.66 +1.0
4,132,656 - Pf6N2E2_3542 0.66 +1.0
4,132,793 + Pf6N2E2_3542 0.72 +0.7
4,132,829 + Pf6N2E2_3542 0.74 +0.4
4,132,829 + Pf6N2E2_3542 0.74 -0.3
4,132,830 - Pf6N2E2_3542 0.74 +0.6
4,132,830 - Pf6N2E2_3542 0.74 +2.0
4,132,842 + Pf6N2E2_3542 0.75 +0.4
4,132,843 - Pf6N2E2_3542 0.75 +2.7
4,132,843 - Pf6N2E2_3542 0.75 +1.1
4,132,850 + Pf6N2E2_3542 0.75 -0.4
4,132,850 + Pf6N2E2_3542 0.75 +1.1
4,132,850 + Pf6N2E2_3542 0.75 +0.4
4,132,851 - Pf6N2E2_3542 0.75 +1.0
4,132,851 - Pf6N2E2_3542 0.75 +0.9
4,132,851 - Pf6N2E2_3542 0.75 +2.1
4,132,865 + Pf6N2E2_3542 0.76 +0.0
4,132,946 + Pf6N2E2_3542 0.79 -0.1
4,132,946 + Pf6N2E2_3542 0.79 -4.4
4,132,947 - Pf6N2E2_3542 0.79 -0.7
4,132,947 - Pf6N2E2_3542 0.79 +0.7
4,132,947 - Pf6N2E2_3542 0.79 +0.6
4,132,989 - Pf6N2E2_3542 0.81 +0.3
4,133,066 + Pf6N2E2_3542 0.85 -0.7
4,133,066 + Pf6N2E2_3542 0.85 -0.8
4,133,066 + Pf6N2E2_3542 0.85 -0.6
4,133,066 + Pf6N2E2_3542 0.85 +0.2
4,133,267 + +2.3
4,133,268 - -0.1
4,133,381 + -0.9
4,133,381 + -0.7
4,133,611 + +0.4
4,133,638 + +0.6
4,133,639 - +0.8
4,133,695 + +0.0
4,133,695 + +1.6
4,133,695 + +1.5
4,133,695 + +0.0
4,133,696 - +1.5
4,133,696 - +0.1
4,133,696 - +0.8
4,133,728 + Pf6N2E2_3543 0.10 -0.1
4,133,728 + Pf6N2E2_3543 0.10 -0.0
4,133,728 + Pf6N2E2_3543 0.10 +0.9
4,133,729 - Pf6N2E2_3543 0.10 +0.9
4,133,729 - Pf6N2E2_3543 0.10 +0.9
4,133,830 + Pf6N2E2_3543 0.18 -1.7
4,133,830 + Pf6N2E2_3543 0.18 +1.6
4,133,831 - Pf6N2E2_3543 0.18 +1.1
4,133,831 - Pf6N2E2_3543 0.18 +0.2
4,134,067 + Pf6N2E2_3543 0.35 -0.5
4,134,067 + Pf6N2E2_3543 0.35 +0.4
4,134,068 - Pf6N2E2_3543 0.35 -1.6
4,134,068 - Pf6N2E2_3543 0.35 +0.7
4,134,068 - Pf6N2E2_3543 0.35 +0.3
4,134,242 - Pf6N2E2_3543 0.47 +0.4
4,134,493 + Pf6N2E2_3543 0.66 +0.6
4,134,589 + Pf6N2E2_3543 0.73 +0.4
4,134,589 + Pf6N2E2_3543 0.73 +0.6
4,134,589 + Pf6N2E2_3543 0.73 +0.4
4,134,589 + Pf6N2E2_3543 0.73 -0.0
4,134,589 + Pf6N2E2_3543 0.73 +1.3
4,134,590 - Pf6N2E2_3543 0.73 -0.9
4,134,590 - Pf6N2E2_3543 0.73 +0.6
4,135,002 + -1.2
4,135,003 - -0.2
4,135,067 + +0.3
4,135,068 - +0.9
4,135,068 - -0.1
4,135,077 + -1.8
4,135,077 + -0.0
4,135,077 + +0.7
4,135,078 - +0.8
4,135,078 - -0.5
4,135,078 - +0.3
4,135,078 - -0.5
4,135,078 - +0.9
4,135,093 - +0.8
4,135,247 + Pf6N2E2_3544 0.21 +0.2
4,135,278 + Pf6N2E2_3544 0.25 +0.3
4,135,278 + Pf6N2E2_3544 0.25 +0.0
4,135,279 - Pf6N2E2_3544 0.25 +0.9
4,135,279 - Pf6N2E2_3544 0.25 +0.4
4,135,415 - Pf6N2E2_3544 0.42 -0.5
4,135,619 + Pf6N2E2_3544 0.68 -0.1
4,135,619 + Pf6N2E2_3544 0.68 +0.1
4,135,620 - Pf6N2E2_3544 0.68 -0.7
4,135,718 + Pf6N2E2_3544 0.81 -2.5
4,135,719 - Pf6N2E2_3544 0.81 -0.8

Or see this region's nucleotide sequence