Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_230

Experiment: octanoate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_229 and Pf6N2E2_230 are separated by 345 nucleotidesPf6N2E2_230 and Pf6N2E2_231 are separated by 35 nucleotides Pf6N2E2_229 - Putative fumarylacetoacetate (FAA) hydrolase, at 291,221 to 292,072 _229 Pf6N2E2_230 - lignostilbene-alpha,beta-dioxygenase, at 292,418 to 293,866 _230 Pf6N2E2_231 - FIG00956946: hypothetical protein, at 293,902 to 295,083 _231 Position (kb) 292 293 294Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 291.607 kb on - strand, within Pf6N2E2_229at 291.607 kb on - strand, within Pf6N2E2_229at 291.607 kb on - strand, within Pf6N2E2_229at 291.784 kb on - strand, within Pf6N2E2_229at 291.826 kb on - strand, within Pf6N2E2_229at 292.032 kb on + strandat 292.032 kb on + strandat 292.032 kb on + strandat 292.032 kb on + strandat 292.033 kb on - strandat 292.036 kb on + strandat 292.037 kb on - strandat 292.037 kb on - strandat 292.039 kb on + strandat 292.055 kb on - strandat 292.055 kb on - strandat 292.110 kb on - strandat 292.196 kb on - strandat 292.196 kb on - strandat 292.337 kb on + strandat 292.338 kb on - strandat 292.388 kb on + strandat 292.388 kb on + strandat 292.388 kb on + strandat 292.389 kb on - strandat 292.389 kb on - strandat 292.570 kb on - strand, within Pf6N2E2_230at 292.570 kb on - strand, within Pf6N2E2_230at 292.570 kb on - strand, within Pf6N2E2_230at 292.709 kb on + strand, within Pf6N2E2_230at 292.710 kb on - strand, within Pf6N2E2_230at 292.731 kb on + strand, within Pf6N2E2_230at 292.732 kb on - strand, within Pf6N2E2_230at 292.732 kb on - strand, within Pf6N2E2_230at 292.789 kb on - strand, within Pf6N2E2_230at 292.789 kb on - strand, within Pf6N2E2_230at 292.821 kb on + strand, within Pf6N2E2_230at 292.822 kb on - strand, within Pf6N2E2_230at 292.822 kb on - strand, within Pf6N2E2_230at 292.916 kb on + strand, within Pf6N2E2_230at 292.916 kb on + strand, within Pf6N2E2_230at 292.917 kb on - strand, within Pf6N2E2_230at 292.920 kb on + strand, within Pf6N2E2_230at 292.921 kb on - strand, within Pf6N2E2_230at 292.944 kb on + strand, within Pf6N2E2_230at 292.944 kb on + strand, within Pf6N2E2_230at 292.945 kb on - strand, within Pf6N2E2_230at 292.945 kb on - strand, within Pf6N2E2_230at 292.945 kb on - strand, within Pf6N2E2_230at 292.945 kb on - strand, within Pf6N2E2_230at 292.980 kb on + strand, within Pf6N2E2_230at 292.980 kb on + strand, within Pf6N2E2_230at 292.980 kb on + strand, within Pf6N2E2_230at 292.980 kb on + strand, within Pf6N2E2_230at 292.980 kb on + strand, within Pf6N2E2_230at 292.981 kb on - strand, within Pf6N2E2_230at 292.981 kb on - strand, within Pf6N2E2_230at 293.014 kb on + strand, within Pf6N2E2_230at 293.015 kb on - strand, within Pf6N2E2_230at 293.227 kb on - strand, within Pf6N2E2_230at 293.284 kb on - strand, within Pf6N2E2_230at 293.319 kb on + strand, within Pf6N2E2_230at 293.319 kb on + strand, within Pf6N2E2_230at 293.547 kb on + strand, within Pf6N2E2_230at 293.548 kb on - strand, within Pf6N2E2_230at 293.548 kb on - strand, within Pf6N2E2_230at 293.820 kb on + strandat 293.989 kb on + strandat 293.996 kb on + strandat 293.997 kb on - strandat 293.997 kb on - strandat 294.151 kb on + strand, within Pf6N2E2_231at 294.152 kb on - strand, within Pf6N2E2_231at 294.152 kb on - strand, within Pf6N2E2_231at 294.155 kb on + strand, within Pf6N2E2_231at 294.180 kb on + strand, within Pf6N2E2_231at 294.181 kb on - strand, within Pf6N2E2_231at 294.227 kb on + strand, within Pf6N2E2_231at 294.227 kb on + strand, within Pf6N2E2_231at 294.287 kb on - strand, within Pf6N2E2_231at 294.413 kb on + strand, within Pf6N2E2_231at 294.413 kb on + strand, within Pf6N2E2_231at 294.413 kb on + strand, within Pf6N2E2_231at 294.414 kb on - strand, within Pf6N2E2_231

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
remove
291,607 - Pf6N2E2_229 0.45 +0.8
291,607 - Pf6N2E2_229 0.45 -1.5
291,607 - Pf6N2E2_229 0.45 -0.4
291,784 - Pf6N2E2_229 0.66 -1.3
291,826 - Pf6N2E2_229 0.71 -0.4
292,032 + -2.4
292,032 + -3.3
292,032 + -0.1
292,032 + -1.9
292,033 - -1.5
292,036 + -1.9
292,037 - +0.1
292,037 - -0.8
292,039 + +0.7
292,055 - +0.5
292,055 - -0.5
292,110 - +0.7
292,196 - -0.8
292,196 - +0.9
292,337 + -3.8
292,338 - +0.1
292,388 + -1.0
292,388 + +2.6
292,388 + -0.8
292,389 - +1.1
292,389 - +0.4
292,570 - Pf6N2E2_230 0.10 -1.0
292,570 - Pf6N2E2_230 0.10 -0.3
292,570 - Pf6N2E2_230 0.10 +1.1
292,709 + Pf6N2E2_230 0.20 -0.8
292,710 - Pf6N2E2_230 0.20 +0.7
292,731 + Pf6N2E2_230 0.22 -0.1
292,732 - Pf6N2E2_230 0.22 -1.2
292,732 - Pf6N2E2_230 0.22 -0.3
292,789 - Pf6N2E2_230 0.26 +0.0
292,789 - Pf6N2E2_230 0.26 -0.3
292,821 + Pf6N2E2_230 0.28 +0.6
292,822 - Pf6N2E2_230 0.28 -0.9
292,822 - Pf6N2E2_230 0.28 -0.7
292,916 + Pf6N2E2_230 0.34 -0.5
292,916 + Pf6N2E2_230 0.34 -1.7
292,917 - Pf6N2E2_230 0.34 +0.4
292,920 + Pf6N2E2_230 0.35 +0.5
292,921 - Pf6N2E2_230 0.35 -0.6
292,944 + Pf6N2E2_230 0.36 -1.9
292,944 + Pf6N2E2_230 0.36 -0.6
292,945 - Pf6N2E2_230 0.36 +1.3
292,945 - Pf6N2E2_230 0.36 -0.9
292,945 - Pf6N2E2_230 0.36 -0.9
292,945 - Pf6N2E2_230 0.36 -1.3
292,980 + Pf6N2E2_230 0.39 -1.8
292,980 + Pf6N2E2_230 0.39 +0.3
292,980 + Pf6N2E2_230 0.39 +0.5
292,980 + Pf6N2E2_230 0.39 -0.9
292,980 + Pf6N2E2_230 0.39 -0.6
292,981 - Pf6N2E2_230 0.39 -0.3
292,981 - Pf6N2E2_230 0.39 -2.5
293,014 + Pf6N2E2_230 0.41 +0.1
293,015 - Pf6N2E2_230 0.41 +0.4
293,227 - Pf6N2E2_230 0.56 +0.7
293,284 - Pf6N2E2_230 0.60 -3.2
293,319 + Pf6N2E2_230 0.62 -2.1
293,319 + Pf6N2E2_230 0.62 -0.1
293,547 + Pf6N2E2_230 0.78 -1.3
293,548 - Pf6N2E2_230 0.78 -0.6
293,548 - Pf6N2E2_230 0.78 -0.1
293,820 + -0.5
293,989 + -0.7
293,996 + +1.1
293,997 - +0.2
293,997 - +0.5
294,151 + Pf6N2E2_231 0.21 -1.4
294,152 - Pf6N2E2_231 0.21 -0.5
294,152 - Pf6N2E2_231 0.21 -0.9
294,155 + Pf6N2E2_231 0.21 -0.1
294,180 + Pf6N2E2_231 0.24 -0.9
294,181 - Pf6N2E2_231 0.24 -3.5
294,227 + Pf6N2E2_231 0.27 +0.5
294,227 + Pf6N2E2_231 0.27 -0.9
294,287 - Pf6N2E2_231 0.33 +0.3
294,413 + Pf6N2E2_231 0.43 +0.2
294,413 + Pf6N2E2_231 0.43 +0.5
294,413 + Pf6N2E2_231 0.43 -2.0
294,414 - Pf6N2E2_231 0.43 +1.1

Or see this region's nucleotide sequence