Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1635 and Pf6N2E2_1636 are separated by 290 nucleotides Pf6N2E2_1636 and Pf6N2E2_1637 are separated by 374 nucleotides
Pf6N2E2_1635 - ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components, at 1,934,639 to 1,935,442
_1635
Pf6N2E2_1636 - Ferrichrome-iron receptor, at 1,935,733 to 1,937,946
_1636
Pf6N2E2_1637 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,938,321 to 1,940,183
_1637
Position (kb)
1935
1936
1937
1938 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1934.935 kb on + strand at 1934.936 kb on - strand, within Pf6N2E2_1635 at 1935.176 kb on - strand, within Pf6N2E2_1635 at 1935.295 kb on + strand, within Pf6N2E2_1635 at 1935.296 kb on - strand, within Pf6N2E2_1635 at 1935.311 kb on + strand, within Pf6N2E2_1635 at 1935.311 kb on + strand, within Pf6N2E2_1635 at 1935.312 kb on - strand, within Pf6N2E2_1635 at 1935.312 kb on - strand, within Pf6N2E2_1635 at 1935.312 kb on - strand, within Pf6N2E2_1635 at 1935.312 kb on - strand, within Pf6N2E2_1635 at 1935.411 kb on + strand at 1935.411 kb on + strand at 1935.411 kb on + strand at 1935.527 kb on + strand at 1935.549 kb on + strand at 1935.549 kb on + strand at 1935.549 kb on + strand at 1935.549 kb on + strand at 1935.550 kb on - strand at 1935.550 kb on - strand at 1935.550 kb on - strand at 1935.550 kb on - strand at 1935.550 kb on - strand at 1935.550 kb on - strand at 1935.550 kb on - strand at 1935.566 kb on - strand at 1935.566 kb on - strand at 1935.566 kb on - strand at 1935.582 kb on - strand at 1935.637 kb on + strand at 1935.646 kb on + strand at 1935.667 kb on + strand at 1935.667 kb on + strand at 1935.667 kb on + strand at 1935.668 kb on - strand at 1935.668 kb on - strand at 1935.879 kb on + strand at 1936.085 kb on - strand, within Pf6N2E2_1636 at 1936.161 kb on - strand, within Pf6N2E2_1636 at 1936.216 kb on + strand, within Pf6N2E2_1636 at 1936.487 kb on - strand, within Pf6N2E2_1636 at 1936.487 kb on - strand, within Pf6N2E2_1636 at 1936.487 kb on - strand, within Pf6N2E2_1636 at 1936.508 kb on - strand, within Pf6N2E2_1636 at 1936.508 kb on - strand, within Pf6N2E2_1636 at 1936.508 kb on - strand, within Pf6N2E2_1636 at 1936.682 kb on - strand, within Pf6N2E2_1636 at 1936.717 kb on + strand, within Pf6N2E2_1636 at 1936.774 kb on + strand, within Pf6N2E2_1636 at 1936.799 kb on - strand, within Pf6N2E2_1636 at 1936.799 kb on - strand, within Pf6N2E2_1636 at 1936.865 kb on - strand at 1936.909 kb on - strand, within Pf6N2E2_1636 at 1936.909 kb on - strand, within Pf6N2E2_1636 at 1936.969 kb on - strand, within Pf6N2E2_1636 at 1936.972 kb on + strand, within Pf6N2E2_1636 at 1936.973 kb on - strand, within Pf6N2E2_1636 at 1937.019 kb on + strand, within Pf6N2E2_1636 at 1937.020 kb on - strand, within Pf6N2E2_1636 at 1937.020 kb on - strand, within Pf6N2E2_1636 at 1937.036 kb on - strand, within Pf6N2E2_1636 at 1937.119 kb on + strand, within Pf6N2E2_1636 at 1937.120 kb on - strand, within Pf6N2E2_1636 at 1937.380 kb on + strand, within Pf6N2E2_1636 at 1937.463 kb on - strand, within Pf6N2E2_1636 at 1937.578 kb on + strand, within Pf6N2E2_1636 at 1937.579 kb on - strand, within Pf6N2E2_1636 at 1937.579 kb on - strand, within Pf6N2E2_1636 at 1937.601 kb on + strand, within Pf6N2E2_1636 at 1937.654 kb on - strand, within Pf6N2E2_1636 at 1937.680 kb on + strand, within Pf6N2E2_1636 at 1937.680 kb on + strand, within Pf6N2E2_1636 at 1937.681 kb on - strand, within Pf6N2E2_1636 at 1937.734 kb on + strand at 1937.782 kb on + strand at 1937.782 kb on + strand at 1937.782 kb on + strand at 1937.783 kb on - strand at 1937.783 kb on - strand at 1937.809 kb on + strand at 1937.810 kb on - strand at 1937.869 kb on + strand at 1937.869 kb on + strand at 1937.876 kb on - strand at 1937.876 kb on - strand at 1937.944 kb on + strand at 1937.944 kb on + strand at 1937.944 kb on + strand at 1937.944 kb on + strand at 1937.945 kb on - strand at 1937.945 kb on - strand at 1938.015 kb on + strand at 1938.015 kb on + strand at 1938.016 kb on - strand at 1938.016 kb on - strand at 1938.039 kb on + strand at 1938.040 kb on - strand at 1938.040 kb on - strand at 1938.072 kb on + strand at 1938.116 kb on - strand at 1938.116 kb on - strand at 1938.116 kb on - strand at 1938.116 kb on - strand at 1938.189 kb on - strand at 1938.202 kb on + strand at 1938.203 kb on - strand at 1938.203 kb on - strand at 1938.203 kb on - strand at 1938.203 kb on - strand at 1938.204 kb on + strand at 1938.204 kb on + strand at 1938.204 kb on + strand at 1938.205 kb on - strand at 1938.321 kb on - strand at 1938.321 kb on - strand at 1938.406 kb on + strand at 1938.441 kb on + strand at 1938.441 kb on + strand at 1938.442 kb on - strand at 1938.442 kb on - strand at 1938.442 kb on - strand at 1938.442 kb on - strand at 1938.573 kb on + strand, within Pf6N2E2_1637 at 1938.574 kb on - strand, within Pf6N2E2_1637 at 1938.634 kb on - strand, within Pf6N2E2_1637 at 1938.634 kb on - strand, within Pf6N2E2_1637 at 1938.634 kb on - strand, within Pf6N2E2_1637 at 1938.634 kb on - strand, within Pf6N2E2_1637 at 1938.639 kb on + strand, within Pf6N2E2_1637 at 1938.639 kb on + strand, within Pf6N2E2_1637 at 1938.639 kb on + strand, within Pf6N2E2_1637 at 1938.639 kb on + strand, within Pf6N2E2_1637 at 1938.640 kb on - strand, within Pf6N2E2_1637 at 1938.640 kb on - strand, within Pf6N2E2_1637 at 1938.640 kb on - strand, within Pf6N2E2_1637 at 1938.640 kb on - strand, within Pf6N2E2_1637 at 1938.660 kb on - strand, within Pf6N2E2_1637 at 1938.660 kb on - strand, within Pf6N2E2_1637
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 1,934,935 + +0.1 1,934,936 - Pf6N2E2_1635 0.37 +0.2 1,935,176 - Pf6N2E2_1635 0.67 -2.5 1,935,295 + Pf6N2E2_1635 0.82 -0.3 1,935,296 - Pf6N2E2_1635 0.82 +0.7 1,935,311 + Pf6N2E2_1635 0.84 -0.2 1,935,311 + Pf6N2E2_1635 0.84 +2.3 1,935,312 - Pf6N2E2_1635 0.84 +0.1 1,935,312 - Pf6N2E2_1635 0.84 -1.0 1,935,312 - Pf6N2E2_1635 0.84 -3.8 1,935,312 - Pf6N2E2_1635 0.84 -0.1 1,935,411 + +1.1 1,935,411 + +0.9 1,935,411 + -0.9 1,935,527 + +2.1 1,935,549 + +1.2 1,935,549 + +0.9 1,935,549 + -0.1 1,935,549 + +0.3 1,935,550 - -0.1 1,935,550 - -0.9 1,935,550 - +0.4 1,935,550 - -0.8 1,935,550 - -0.6 1,935,550 - -0.2 1,935,550 - -1.5 1,935,566 - -4.0 1,935,566 - -0.4 1,935,566 - -0.6 1,935,582 - -0.7 1,935,637 + +0.1 1,935,646 + +1.6 1,935,667 + -0.6 1,935,667 + +0.6 1,935,667 + -3.0 1,935,668 - -2.3 1,935,668 - -2.9 1,935,879 + -3.5 1,936,085 - Pf6N2E2_1636 0.16 -1.2 1,936,161 - Pf6N2E2_1636 0.19 -3.4 1,936,216 + Pf6N2E2_1636 0.22 -2.5 1,936,487 - Pf6N2E2_1636 0.34 -1.4 1,936,487 - Pf6N2E2_1636 0.34 -2.4 1,936,487 - Pf6N2E2_1636 0.34 -2.1 1,936,508 - Pf6N2E2_1636 0.35 -1.9 1,936,508 - Pf6N2E2_1636 0.35 -2.3 1,936,508 - Pf6N2E2_1636 0.35 -2.3 1,936,682 - Pf6N2E2_1636 0.43 -2.3 1,936,717 + Pf6N2E2_1636 0.44 -2.9 1,936,774 + Pf6N2E2_1636 0.47 -1.9 1,936,799 - Pf6N2E2_1636 0.48 -3.8 1,936,799 - Pf6N2E2_1636 0.48 -2.4 1,936,865 - -1.3 1,936,909 - Pf6N2E2_1636 0.53 -1.9 1,936,909 - Pf6N2E2_1636 0.53 -1.5 1,936,969 - Pf6N2E2_1636 0.56 -0.9 1,936,972 + Pf6N2E2_1636 0.56 -0.7 1,936,973 - Pf6N2E2_1636 0.56 -2.8 1,937,019 + Pf6N2E2_1636 0.58 -2.1 1,937,020 - Pf6N2E2_1636 0.58 -0.3 1,937,020 - Pf6N2E2_1636 0.58 -3.2 1,937,036 - Pf6N2E2_1636 0.59 -2.3 1,937,119 + Pf6N2E2_1636 0.63 -3.0 1,937,120 - Pf6N2E2_1636 0.63 -1.4 1,937,380 + Pf6N2E2_1636 0.74 -2.3 1,937,463 - Pf6N2E2_1636 0.78 -2.2 1,937,578 + Pf6N2E2_1636 0.83 -2.9 1,937,579 - Pf6N2E2_1636 0.83 +0.7 1,937,579 - Pf6N2E2_1636 0.83 +0.7 1,937,601 + Pf6N2E2_1636 0.84 -1.6 1,937,654 - Pf6N2E2_1636 0.87 -2.6 1,937,680 + Pf6N2E2_1636 0.88 -2.8 1,937,680 + Pf6N2E2_1636 0.88 -3.6 1,937,681 - Pf6N2E2_1636 0.88 -3.4 1,937,734 + -2.6 1,937,782 + -2.1 1,937,782 + -2.8 1,937,782 + -3.3 1,937,783 - -1.3 1,937,783 - +0.2 1,937,809 + -1.8 1,937,810 - -0.4 1,937,869 + -0.6 1,937,869 + +0.5 1,937,876 - -3.7 1,937,876 - -0.3 1,937,944 + +0.5 1,937,944 + +0.7 1,937,944 + +0.5 1,937,944 + -0.4 1,937,945 - -1.5 1,937,945 - +0.5 1,938,015 + -0.2 1,938,015 + -0.4 1,938,016 - -0.2 1,938,016 - -0.3 1,938,039 + -1.2 1,938,040 - -1.8 1,938,040 - +0.9 1,938,072 + -1.3 1,938,116 - -1.2 1,938,116 - +1.3 1,938,116 - +0.2 1,938,116 - -0.6 1,938,189 - -0.1 1,938,202 + -1.0 1,938,203 - -0.1 1,938,203 - -0.3 1,938,203 - +1.1 1,938,203 - -0.7 1,938,204 + -4.0 1,938,204 + -1.6 1,938,204 + -2.9 1,938,205 - -1.2 1,938,321 - -0.7 1,938,321 - -1.3 1,938,406 + -0.3 1,938,441 + -1.3 1,938,441 + -2.3 1,938,442 - -0.2 1,938,442 - +0.1 1,938,442 - -0.3 1,938,442 - +0.5 1,938,573 + Pf6N2E2_1637 0.14 -0.5 1,938,574 - Pf6N2E2_1637 0.14 -1.3 1,938,634 - Pf6N2E2_1637 0.17 -1.5 1,938,634 - Pf6N2E2_1637 0.17 -0.2 1,938,634 - Pf6N2E2_1637 0.17 -0.4 1,938,634 - Pf6N2E2_1637 0.17 +0.3 1,938,639 + Pf6N2E2_1637 0.17 +0.5 1,938,639 + Pf6N2E2_1637 0.17 +0.5 1,938,639 + Pf6N2E2_1637 0.17 +0.5 1,938,639 + Pf6N2E2_1637 0.17 -0.0 1,938,640 - Pf6N2E2_1637 0.17 -2.5 1,938,640 - Pf6N2E2_1637 0.17 +1.0 1,938,640 - Pf6N2E2_1637 0.17 -1.4 1,938,640 - Pf6N2E2_1637 0.17 +0.7 1,938,660 - Pf6N2E2_1637 0.18 -0.6 1,938,660 - Pf6N2E2_1637 0.18 +0.4
Or see this region's nucleotide sequence