Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1636

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1635 and Pf6N2E2_1636 are separated by 290 nucleotidesPf6N2E2_1636 and Pf6N2E2_1637 are separated by 374 nucleotides Pf6N2E2_1635 - ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components, at 1,934,639 to 1,935,442 _1635 Pf6N2E2_1636 - Ferrichrome-iron receptor, at 1,935,733 to 1,937,946 _1636 Pf6N2E2_1637 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,938,321 to 1,940,183 _1637 Position (kb) 1935 1936 1937 1938Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1934.935 kb on + strandat 1934.936 kb on - strand, within Pf6N2E2_1635at 1935.176 kb on - strand, within Pf6N2E2_1635at 1935.295 kb on + strand, within Pf6N2E2_1635at 1935.296 kb on - strand, within Pf6N2E2_1635at 1935.311 kb on + strand, within Pf6N2E2_1635at 1935.311 kb on + strand, within Pf6N2E2_1635at 1935.312 kb on - strand, within Pf6N2E2_1635at 1935.312 kb on - strand, within Pf6N2E2_1635at 1935.312 kb on - strand, within Pf6N2E2_1635at 1935.312 kb on - strand, within Pf6N2E2_1635at 1935.411 kb on + strandat 1935.411 kb on + strandat 1935.411 kb on + strandat 1935.527 kb on + strandat 1935.549 kb on + strandat 1935.549 kb on + strandat 1935.549 kb on + strandat 1935.549 kb on + strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.550 kb on - strandat 1935.566 kb on - strandat 1935.566 kb on - strandat 1935.566 kb on - strandat 1935.582 kb on - strandat 1935.637 kb on + strandat 1935.646 kb on + strandat 1935.667 kb on + strandat 1935.667 kb on + strandat 1935.667 kb on + strandat 1935.668 kb on - strandat 1935.668 kb on - strandat 1935.879 kb on + strandat 1936.085 kb on - strand, within Pf6N2E2_1636at 1936.161 kb on - strand, within Pf6N2E2_1636at 1936.216 kb on + strand, within Pf6N2E2_1636at 1936.487 kb on - strand, within Pf6N2E2_1636at 1936.487 kb on - strand, within Pf6N2E2_1636at 1936.487 kb on - strand, within Pf6N2E2_1636at 1936.508 kb on - strand, within Pf6N2E2_1636at 1936.508 kb on - strand, within Pf6N2E2_1636at 1936.508 kb on - strand, within Pf6N2E2_1636at 1936.682 kb on - strand, within Pf6N2E2_1636at 1936.717 kb on + strand, within Pf6N2E2_1636at 1936.774 kb on + strand, within Pf6N2E2_1636at 1936.799 kb on - strand, within Pf6N2E2_1636at 1936.799 kb on - strand, within Pf6N2E2_1636at 1936.865 kb on - strandat 1936.909 kb on - strand, within Pf6N2E2_1636at 1936.909 kb on - strand, within Pf6N2E2_1636at 1936.969 kb on - strand, within Pf6N2E2_1636at 1936.972 kb on + strand, within Pf6N2E2_1636at 1936.973 kb on - strand, within Pf6N2E2_1636at 1937.019 kb on + strand, within Pf6N2E2_1636at 1937.020 kb on - strand, within Pf6N2E2_1636at 1937.020 kb on - strand, within Pf6N2E2_1636at 1937.036 kb on - strand, within Pf6N2E2_1636at 1937.119 kb on + strand, within Pf6N2E2_1636at 1937.120 kb on - strand, within Pf6N2E2_1636at 1937.380 kb on + strand, within Pf6N2E2_1636at 1937.463 kb on - strand, within Pf6N2E2_1636at 1937.578 kb on + strand, within Pf6N2E2_1636at 1937.579 kb on - strand, within Pf6N2E2_1636at 1937.579 kb on - strand, within Pf6N2E2_1636at 1937.601 kb on + strand, within Pf6N2E2_1636at 1937.654 kb on - strand, within Pf6N2E2_1636at 1937.680 kb on + strand, within Pf6N2E2_1636at 1937.680 kb on + strand, within Pf6N2E2_1636at 1937.681 kb on - strand, within Pf6N2E2_1636at 1937.734 kb on + strandat 1937.782 kb on + strandat 1937.782 kb on + strandat 1937.782 kb on + strandat 1937.783 kb on - strandat 1937.783 kb on - strandat 1937.809 kb on + strandat 1937.810 kb on - strandat 1937.869 kb on + strandat 1937.869 kb on + strandat 1937.876 kb on - strandat 1937.876 kb on - strandat 1937.944 kb on + strandat 1937.944 kb on + strandat 1937.944 kb on + strandat 1937.944 kb on + strandat 1937.945 kb on - strandat 1937.945 kb on - strandat 1938.015 kb on + strandat 1938.015 kb on + strandat 1938.016 kb on - strandat 1938.016 kb on - strandat 1938.039 kb on + strandat 1938.040 kb on - strandat 1938.040 kb on - strandat 1938.072 kb on + strandat 1938.116 kb on - strandat 1938.116 kb on - strandat 1938.116 kb on - strandat 1938.116 kb on - strandat 1938.189 kb on - strandat 1938.202 kb on + strandat 1938.203 kb on - strandat 1938.203 kb on - strandat 1938.203 kb on - strandat 1938.203 kb on - strandat 1938.204 kb on + strandat 1938.204 kb on + strandat 1938.204 kb on + strandat 1938.205 kb on - strandat 1938.321 kb on - strandat 1938.321 kb on - strandat 1938.406 kb on + strandat 1938.441 kb on + strandat 1938.441 kb on + strandat 1938.442 kb on - strandat 1938.442 kb on - strandat 1938.442 kb on - strandat 1938.442 kb on - strandat 1938.573 kb on + strand, within Pf6N2E2_1637at 1938.574 kb on - strand, within Pf6N2E2_1637at 1938.634 kb on - strand, within Pf6N2E2_1637at 1938.634 kb on - strand, within Pf6N2E2_1637at 1938.634 kb on - strand, within Pf6N2E2_1637at 1938.634 kb on - strand, within Pf6N2E2_1637at 1938.639 kb on + strand, within Pf6N2E2_1637at 1938.639 kb on + strand, within Pf6N2E2_1637at 1938.639 kb on + strand, within Pf6N2E2_1637at 1938.639 kb on + strand, within Pf6N2E2_1637at 1938.640 kb on - strand, within Pf6N2E2_1637at 1938.640 kb on - strand, within Pf6N2E2_1637at 1938.640 kb on - strand, within Pf6N2E2_1637at 1938.640 kb on - strand, within Pf6N2E2_1637at 1938.660 kb on - strand, within Pf6N2E2_1637at 1938.660 kb on - strand, within Pf6N2E2_1637

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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1,934,935 + +0.1
1,934,936 - Pf6N2E2_1635 0.37 +0.2
1,935,176 - Pf6N2E2_1635 0.67 -2.5
1,935,295 + Pf6N2E2_1635 0.82 -0.3
1,935,296 - Pf6N2E2_1635 0.82 +0.7
1,935,311 + Pf6N2E2_1635 0.84 -0.2
1,935,311 + Pf6N2E2_1635 0.84 +2.3
1,935,312 - Pf6N2E2_1635 0.84 +0.1
1,935,312 - Pf6N2E2_1635 0.84 -1.0
1,935,312 - Pf6N2E2_1635 0.84 -3.8
1,935,312 - Pf6N2E2_1635 0.84 -0.1
1,935,411 + +1.1
1,935,411 + +0.9
1,935,411 + -0.9
1,935,527 + +2.1
1,935,549 + +1.2
1,935,549 + +0.9
1,935,549 + -0.1
1,935,549 + +0.3
1,935,550 - -0.1
1,935,550 - -0.9
1,935,550 - +0.4
1,935,550 - -0.8
1,935,550 - -0.6
1,935,550 - -0.2
1,935,550 - -1.5
1,935,566 - -4.0
1,935,566 - -0.4
1,935,566 - -0.6
1,935,582 - -0.7
1,935,637 + +0.1
1,935,646 + +1.6
1,935,667 + -0.6
1,935,667 + +0.6
1,935,667 + -3.0
1,935,668 - -2.3
1,935,668 - -2.9
1,935,879 + -3.5
1,936,085 - Pf6N2E2_1636 0.16 -1.2
1,936,161 - Pf6N2E2_1636 0.19 -3.4
1,936,216 + Pf6N2E2_1636 0.22 -2.5
1,936,487 - Pf6N2E2_1636 0.34 -1.4
1,936,487 - Pf6N2E2_1636 0.34 -2.4
1,936,487 - Pf6N2E2_1636 0.34 -2.1
1,936,508 - Pf6N2E2_1636 0.35 -1.9
1,936,508 - Pf6N2E2_1636 0.35 -2.3
1,936,508 - Pf6N2E2_1636 0.35 -2.3
1,936,682 - Pf6N2E2_1636 0.43 -2.3
1,936,717 + Pf6N2E2_1636 0.44 -2.9
1,936,774 + Pf6N2E2_1636 0.47 -1.9
1,936,799 - Pf6N2E2_1636 0.48 -3.8
1,936,799 - Pf6N2E2_1636 0.48 -2.4
1,936,865 - -1.3
1,936,909 - Pf6N2E2_1636 0.53 -1.9
1,936,909 - Pf6N2E2_1636 0.53 -1.5
1,936,969 - Pf6N2E2_1636 0.56 -0.9
1,936,972 + Pf6N2E2_1636 0.56 -0.7
1,936,973 - Pf6N2E2_1636 0.56 -2.8
1,937,019 + Pf6N2E2_1636 0.58 -2.1
1,937,020 - Pf6N2E2_1636 0.58 -0.3
1,937,020 - Pf6N2E2_1636 0.58 -3.2
1,937,036 - Pf6N2E2_1636 0.59 -2.3
1,937,119 + Pf6N2E2_1636 0.63 -3.0
1,937,120 - Pf6N2E2_1636 0.63 -1.4
1,937,380 + Pf6N2E2_1636 0.74 -2.3
1,937,463 - Pf6N2E2_1636 0.78 -2.2
1,937,578 + Pf6N2E2_1636 0.83 -2.9
1,937,579 - Pf6N2E2_1636 0.83 +0.7
1,937,579 - Pf6N2E2_1636 0.83 +0.7
1,937,601 + Pf6N2E2_1636 0.84 -1.6
1,937,654 - Pf6N2E2_1636 0.87 -2.6
1,937,680 + Pf6N2E2_1636 0.88 -2.8
1,937,680 + Pf6N2E2_1636 0.88 -3.6
1,937,681 - Pf6N2E2_1636 0.88 -3.4
1,937,734 + -2.6
1,937,782 + -2.1
1,937,782 + -2.8
1,937,782 + -3.3
1,937,783 - -1.3
1,937,783 - +0.2
1,937,809 + -1.8
1,937,810 - -0.4
1,937,869 + -0.6
1,937,869 + +0.5
1,937,876 - -3.7
1,937,876 - -0.3
1,937,944 + +0.5
1,937,944 + +0.7
1,937,944 + +0.5
1,937,944 + -0.4
1,937,945 - -1.5
1,937,945 - +0.5
1,938,015 + -0.2
1,938,015 + -0.4
1,938,016 - -0.2
1,938,016 - -0.3
1,938,039 + -1.2
1,938,040 - -1.8
1,938,040 - +0.9
1,938,072 + -1.3
1,938,116 - -1.2
1,938,116 - +1.3
1,938,116 - +0.2
1,938,116 - -0.6
1,938,189 - -0.1
1,938,202 + -1.0
1,938,203 - -0.1
1,938,203 - -0.3
1,938,203 - +1.1
1,938,203 - -0.7
1,938,204 + -4.0
1,938,204 + -1.6
1,938,204 + -2.9
1,938,205 - -1.2
1,938,321 - -0.7
1,938,321 - -1.3
1,938,406 + -0.3
1,938,441 + -1.3
1,938,441 + -2.3
1,938,442 - -0.2
1,938,442 - +0.1
1,938,442 - -0.3
1,938,442 - +0.5
1,938,573 + Pf6N2E2_1637 0.14 -0.5
1,938,574 - Pf6N2E2_1637 0.14 -1.3
1,938,634 - Pf6N2E2_1637 0.17 -1.5
1,938,634 - Pf6N2E2_1637 0.17 -0.2
1,938,634 - Pf6N2E2_1637 0.17 -0.4
1,938,634 - Pf6N2E2_1637 0.17 +0.3
1,938,639 + Pf6N2E2_1637 0.17 +0.5
1,938,639 + Pf6N2E2_1637 0.17 +0.5
1,938,639 + Pf6N2E2_1637 0.17 +0.5
1,938,639 + Pf6N2E2_1637 0.17 -0.0
1,938,640 - Pf6N2E2_1637 0.17 -2.5
1,938,640 - Pf6N2E2_1637 0.17 +1.0
1,938,640 - Pf6N2E2_1637 0.17 -1.4
1,938,640 - Pf6N2E2_1637 0.17 +0.7
1,938,660 - Pf6N2E2_1637 0.18 -0.6
1,938,660 - Pf6N2E2_1637 0.18 +0.4

Or see this region's nucleotide sequence