Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_124

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_122 and Pf6N2E2_123 are separated by 0 nucleotidesPf6N2E2_123 and Pf6N2E2_124 overlap by 14 nucleotidesPf6N2E2_124 and Pf6N2E2_125 overlap by 4 nucleotides Pf6N2E2_122 - Tyrosine-protein kinase Wzc (EC 2.7.10.2), at 169,853 to 170,497 _122 Pf6N2E2_123 - Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6), at 170,498 to 171,244 _123 Pf6N2E2_124 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 171,231 to 172,310 _124 Pf6N2E2_125 - UDP-glucose dehydrogenase (EC 1.1.1.22), at 172,307 to 173,671 _125 Position (kb) 171 172 173Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 170.499 kb on + strandat 170.500 kb on - strandat 170.583 kb on + strand, within Pf6N2E2_123at 170.583 kb on + strand, within Pf6N2E2_123at 170.583 kb on + strand, within Pf6N2E2_123at 170.583 kb on + strand, within Pf6N2E2_123at 170.583 kb on + strand, within Pf6N2E2_123at 170.584 kb on - strand, within Pf6N2E2_123at 170.584 kb on - strand, within Pf6N2E2_123at 170.584 kb on - strand, within Pf6N2E2_123at 170.664 kb on + strand, within Pf6N2E2_123at 170.664 kb on + strand, within Pf6N2E2_123at 170.664 kb on + strand, within Pf6N2E2_123at 170.697 kb on + strand, within Pf6N2E2_123at 170.697 kb on + strand, within Pf6N2E2_123at 170.703 kb on + strand, within Pf6N2E2_123at 170.756 kb on + strand, within Pf6N2E2_123at 170.756 kb on + strand, within Pf6N2E2_123at 170.757 kb on - strand, within Pf6N2E2_123at 170.757 kb on - strand, within Pf6N2E2_123at 170.774 kb on + strand, within Pf6N2E2_123at 170.931 kb on + strand, within Pf6N2E2_123at 170.932 kb on - strand, within Pf6N2E2_123at 171.038 kb on + strand, within Pf6N2E2_123at 171.313 kb on + strandat 171.313 kb on + strandat 171.493 kb on + strand, within Pf6N2E2_124at 171.493 kb on + strand, within Pf6N2E2_124at 171.493 kb on + strand, within Pf6N2E2_124at 171.532 kb on + strand, within Pf6N2E2_124at 171.533 kb on - strand, within Pf6N2E2_124at 171.649 kb on + strand, within Pf6N2E2_124at 171.649 kb on + strand, within Pf6N2E2_124at 171.811 kb on + strand, within Pf6N2E2_124at 171.811 kb on + strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.916 kb on + strand, within Pf6N2E2_124at 171.916 kb on + strand, within Pf6N2E2_124at 171.917 kb on - strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 172.012 kb on + strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.071 kb on + strand, within Pf6N2E2_124at 172.202 kb on - strand, within Pf6N2E2_124at 172.204 kb on + strandat 172.404 kb on + strandat 172.405 kb on - strandat 172.405 kb on - strandat 172.455 kb on - strand, within Pf6N2E2_125at 172.569 kb on + strand, within Pf6N2E2_125at 172.605 kb on + strand, within Pf6N2E2_125at 172.768 kb on + strand, within Pf6N2E2_125at 172.899 kb on + strand, within Pf6N2E2_125at 173.106 kb on + strand, within Pf6N2E2_125at 173.106 kb on + strand, within Pf6N2E2_125at 173.228 kb on + strand, within Pf6N2E2_125

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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170,499 + +1.7
170,500 - +1.3
170,583 + Pf6N2E2_123 0.11 -0.4
170,583 + Pf6N2E2_123 0.11 -0.4
170,583 + Pf6N2E2_123 0.11 +0.7
170,583 + Pf6N2E2_123 0.11 -1.0
170,583 + Pf6N2E2_123 0.11 -1.9
170,584 - Pf6N2E2_123 0.12 -0.3
170,584 - Pf6N2E2_123 0.12 +0.5
170,584 - Pf6N2E2_123 0.12 -0.3
170,664 + Pf6N2E2_123 0.22 +0.3
170,664 + Pf6N2E2_123 0.22 -0.0
170,664 + Pf6N2E2_123 0.22 -0.7
170,697 + Pf6N2E2_123 0.27 -1.0
170,697 + Pf6N2E2_123 0.27 -0.0
170,703 + Pf6N2E2_123 0.27 +0.6
170,756 + Pf6N2E2_123 0.35 +1.2
170,756 + Pf6N2E2_123 0.35 -0.0
170,757 - Pf6N2E2_123 0.35 -3.8
170,757 - Pf6N2E2_123 0.35 -1.9
170,774 + Pf6N2E2_123 0.37 -1.6
170,931 + Pf6N2E2_123 0.58 -0.7
170,932 - Pf6N2E2_123 0.58 +0.3
171,038 + Pf6N2E2_123 0.72 -1.1
171,313 + -0.7
171,313 + +0.7
171,493 + Pf6N2E2_124 0.24 +0.9
171,493 + Pf6N2E2_124 0.24 -0.6
171,493 + Pf6N2E2_124 0.24 -1.2
171,532 + Pf6N2E2_124 0.28 -2.3
171,533 - Pf6N2E2_124 0.28 -0.7
171,649 + Pf6N2E2_124 0.39 +0.5
171,649 + Pf6N2E2_124 0.39 -2.2
171,811 + Pf6N2E2_124 0.54 -0.1
171,811 + Pf6N2E2_124 0.54 -0.5
171,812 - Pf6N2E2_124 0.54 -4.1
171,812 - Pf6N2E2_124 0.54 -0.6
171,812 - Pf6N2E2_124 0.54 -0.3
171,812 - Pf6N2E2_124 0.54 -0.9
171,812 - Pf6N2E2_124 0.54 +0.8
171,916 + Pf6N2E2_124 0.63 +0.2
171,916 + Pf6N2E2_124 0.63 +0.9
171,917 - Pf6N2E2_124 0.64 +0.4
171,937 + Pf6N2E2_124 0.65 -1.8
171,937 + Pf6N2E2_124 0.65 +2.1
171,937 + Pf6N2E2_124 0.65 -1.5
171,937 + Pf6N2E2_124 0.65 -1.0
171,937 + Pf6N2E2_124 0.65 -0.0
171,937 + Pf6N2E2_124 0.65 -2.3
171,981 - Pf6N2E2_124 0.69 +0.9
171,981 - Pf6N2E2_124 0.69 -0.7
171,981 - Pf6N2E2_124 0.69 -2.8
171,981 - Pf6N2E2_124 0.69 +0.1
171,981 - Pf6N2E2_124 0.69 -0.7
172,012 + Pf6N2E2_124 0.72 +1.1
172,013 - Pf6N2E2_124 0.72 +0.1
172,013 - Pf6N2E2_124 0.72 +1.5
172,013 - Pf6N2E2_124 0.72 +0.1
172,013 - Pf6N2E2_124 0.72 -1.1
172,013 - Pf6N2E2_124 0.72 -1.0
172,071 + Pf6N2E2_124 0.78 +0.3
172,202 - Pf6N2E2_124 0.90 -3.0
172,204 + +1.3
172,404 + +1.0
172,405 - -0.1
172,405 - +0.1
172,455 - Pf6N2E2_125 0.11 -0.0
172,569 + Pf6N2E2_125 0.19 +0.6
172,605 + Pf6N2E2_125 0.22 +0.4
172,768 + Pf6N2E2_125 0.34 +1.1
172,899 + Pf6N2E2_125 0.43 +1.2
173,106 + Pf6N2E2_125 0.59 +0.2
173,106 + Pf6N2E2_125 0.59 +0.4
173,228 + Pf6N2E2_125 0.67 -0.8

Or see this region's nucleotide sequence