Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06605

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,419,089	-				+0.6
1,419,089	-				-0.2
1,419,089	-				+0.4
1,419,090	+				-0.6
1,419,090	+				-1.5
1,419,090	+				-0.4
1,419,090	+				-0.5
1,419,090	+				-2.0
1,419,090	+				-0.1
1,419,090	+				+0.1
1,419,090	+				-0.1
1,419,090	+				-1.2
1,419,090	+				+0.3
1,419,090	+				+0.9
1,419,090	+				-0.8
1,419,090	+				-0.9
1,419,090	+				+1.7
1,419,090	+				-0.4
1,419,090	+				-0.8
1,419,090	+				-0.0
1,419,091	-				-0.7
1,419,091	-				-0.8
1,419,091	-				-0.2
1,419,091	-				+1.2
1,419,091	-				-0.8
1,419,091	-				+0.5
1,419,091	-				+0.4
1,419,091	-				-0.1
1,419,091	-				+0.3
1,419,091	-				-0.0
1,419,091	-				+0.2
1,419,091	-				-0.2
1,419,091	-				+0.5
1,419,091	-				+0.9
1,419,091	-				-0.9
1,419,091	-				-1.3
1,419,091	-				+1.9
1,419,274	+				-0.9
1,419,274	+				+1.1
1,419,274	+				-0.4
1,419,274	+				+0.4
1,419,274	+				+0.9
1,419,274	+				+0.3
1,419,274	+				+0.7
1,419,274	+				-1.7
1,419,274	+				-0.4
1,419,274	+				+0.6
1,419,274	+				+0.9
1,419,274	+				+0.2
1,419,274	+				+0.1
1,419,274	+				-0.1
1,419,274	+				+0.2
1,419,275	-				-0.6
1,419,275	-				-0.1
1,419,275	-				-1.7
1,419,275	-				-0.3
1,419,275	-				-0.5
1,419,340	+		LRK54_RS06600	0.14	+1.5
1,419,340	+		LRK54_RS06600	0.14	+0.1
1,419,340	+		LRK54_RS06600	0.14	+1.0
1,419,340	+		LRK54_RS06600	0.14	+0.3
1,419,340	+		LRK54_RS06600	0.14	-0.1
1,419,340	+		LRK54_RS06600	0.14	-0.1
1,419,340	+		LRK54_RS06600	0.14	+1.2
1,419,340	+		LRK54_RS06600	0.14	+0.9
1,419,340	+		LRK54_RS06600	0.14	-0.3
1,419,340	+		LRK54_RS06600	0.14	-0.5
1,419,340	+		LRK54_RS06600	0.14	-0.7
1,419,340	+		LRK54_RS06600	0.14	+0.9
1,419,340	+		LRK54_RS06600	0.14	+0.2
1,419,341	-		LRK54_RS06600	0.14	+0.3
1,419,341	-		LRK54_RS06600	0.14	-1.5
1,419,341	-		LRK54_RS06600	0.14	+0.2
1,419,341	-		LRK54_RS06600	0.14	-0.9
1,419,341	-		LRK54_RS06600	0.14	+0.4
1,419,341	-		LRK54_RS06600	0.14	-0.0
1,419,341	-		LRK54_RS06600	0.14	-0.1
1,419,341	-		LRK54_RS06600	0.14	-1.1
1,419,341	-		LRK54_RS06600	0.14	-0.6
1,419,341	-		LRK54_RS06600	0.14	-0.1
1,419,341	-		LRK54_RS06600	0.14	-0.6
1,419,341	-		LRK54_RS06600	0.14	-1.8
1,419,341	-		LRK54_RS06600	0.14	+0.6
1,419,341	-		LRK54_RS06600	0.14	-0.1
1,419,341	-		LRK54_RS06600	0.14	-0.4
1,419,341	-		LRK54_RS06600	0.14	+1.0
1,419,341	-		LRK54_RS06600	0.14	-2.0
1,419,341	-		LRK54_RS06600	0.14	-0.1
1,419,341	-		LRK54_RS06600	0.14	-2.5
1,419,341	-		LRK54_RS06600	0.14	+0.6
1,419,458	+		LRK54_RS06600	0.28	-2.1
1,419,459	-		LRK54_RS06600	0.29	-0.1
1,419,459	-		LRK54_RS06600	0.29	-0.6
1,419,553	+		LRK54_RS06600	0.40	-0.8
1,419,553	+		LRK54_RS06600	0.40	-0.8
1,419,553	+		LRK54_RS06600	0.40	-0.7
1,419,553	+		LRK54_RS06600	0.40	+1.3
1,419,553	+		LRK54_RS06600	0.40	+0.2
1,419,553	+		LRK54_RS06600	0.40	+1.4
1,419,553	+		LRK54_RS06600	0.40	-0.2
1,419,553	+		LRK54_RS06600	0.40	-0.9
1,419,553	+		LRK54_RS06600	0.40	-0.8
1,419,553	+		LRK54_RS06600	0.40	-0.7
1,419,553	+		LRK54_RS06600	0.40	-0.1
1,419,553	+		LRK54_RS06600	0.40	-0.0
1,419,553	+		LRK54_RS06600	0.40	-0.9
1,419,553	+		LRK54_RS06600	0.40	-0.9
1,419,553	+		LRK54_RS06600	0.40	-0.7
1,419,553	+		LRK54_RS06600	0.40	-1.6
1,419,554	-		LRK54_RS06600	0.40	+0.8
1,419,554	-		LRK54_RS06600	0.40	-0.3
1,419,554	-		LRK54_RS06600	0.40	-1.0
1,419,554	-		LRK54_RS06600	0.40	-0.2
1,419,554	-		LRK54_RS06600	0.40	+0.9
1,419,554	-		LRK54_RS06600	0.40	-1.5
1,419,554	-		LRK54_RS06600	0.40	-1.0
1,419,554	-		LRK54_RS06600	0.40	-0.3
1,419,560	+		LRK54_RS06600	0.41	+0.9
1,419,561	-		LRK54_RS06600	0.41	+0.3
1,419,561	-		LRK54_RS06600	0.41	-0.0
1,419,640	+		LRK54_RS06600	0.51	-1.0
1,419,640	+		LRK54_RS06600	0.51	+1.1
1,419,640	+		LRK54_RS06600	0.51	+3.0
1,419,640	+		LRK54_RS06600	0.51	+0.1
1,419,640	+		LRK54_RS06600	0.51	-3.3
1,419,640	+		LRK54_RS06600	0.51	-0.6
1,419,641	-		LRK54_RS06600	0.51	+1.0
1,419,641	-		LRK54_RS06600	0.51	-0.8
1,419,680	+		LRK54_RS06600	0.56	+0.3
1,419,680	+		LRK54_RS06600	0.56	-0.5
1,419,681	-		LRK54_RS06600	0.56	+0.7
1,419,890	+		LRK54_RS06600	0.81	+1.1
1,419,890	+		LRK54_RS06600	0.81	-0.6
1,419,890	+		LRK54_RS06600	0.81	-1.2
1,419,890	+		LRK54_RS06600	0.81	-1.3
1,419,890	+		LRK54_RS06600	0.81	+1.4
1,419,890	+		LRK54_RS06600	0.81	-1.2
1,419,890	+		LRK54_RS06600	0.81	+0.4
1,419,890	+		LRK54_RS06600	0.81	+0.8
1,419,890	+		LRK54_RS06600	0.81	+0.9
1,419,890	+		LRK54_RS06600	0.81	-3.2
1,419,890	+		LRK54_RS06600	0.81	-1.5
1,419,890	+		LRK54_RS06600	0.81	-0.5
1,419,890	+		LRK54_RS06600	0.81	-0.1
1,419,890	+		LRK54_RS06600	0.81	-0.1
1,419,890	+		LRK54_RS06600	0.81	-0.3
1,419,890	+		LRK54_RS06600	0.81	+0.1
1,419,890	+		LRK54_RS06600	0.81	+0.4
1,419,890	+		LRK54_RS06600	0.81	+0.2
1,419,890	+		LRK54_RS06600	0.81	-0.1
1,419,890	+		LRK54_RS06600	0.81	-1.1
1,419,890	+		LRK54_RS06600	0.81	-2.4
1,419,891	-		LRK54_RS06600	0.81	+0.6
1,419,891	-		LRK54_RS06600	0.81	+0.4
1,419,891	-		LRK54_RS06600	0.81	+1.1
1,419,891	-		LRK54_RS06600	0.81	+0.2
1,419,891	-		LRK54_RS06600	0.81	-0.1
1,419,891	-		LRK54_RS06600	0.81	-0.4
1,419,891	-		LRK54_RS06600	0.81	-0.4
1,419,891	-		LRK54_RS06600	0.81	+1.4
1,419,891	-		LRK54_RS06600	0.81	-1.0
1,419,891	-		LRK54_RS06600	0.81	-1.1
1,419,891	-		LRK54_RS06600	0.81	+1.0
1,419,891	-		LRK54_RS06600	0.81	-0.3
1,419,891	-		LRK54_RS06600	0.81	-0.4
1,420,075	+				+0.2
1,420,075	+				+1.2
1,420,075	+				+0.1
1,420,075	+				+0.5
1,420,075	+				-1.1
1,420,075	+				-0.3
1,420,075	+				+0.1
1,420,075	+				-2.3
1,420,075	+				+0.0
1,420,075	+				-0.2
1,420,075	+				-0.4
1,420,075	+				+0.4
1,420,075	+				-1.6
1,420,075	+				-0.4
1,420,075	+				-0.5
1,420,075	+				+1.2
1,420,075	+				+0.2
1,420,075	+				-0.3
1,420,075	+				+0.8
1,420,075	+				+0.8
1,420,075	+				+0.0
1,420,076	-				-0.4
1,420,076	-				-1.1
1,420,076	-				-0.1
1,420,076	-				+0.3
1,420,076	-				+0.2
1,420,076	-				-1.0
1,420,076	-				-0.8
1,420,076	-				+1.9
1,420,076	-				+0.3
1,420,076	-				+0.9
1,420,076	-				-0.3
1,420,076	-				-0.4
1,420,076	-				+0.9
1,420,076	-				+0.2
1,420,076	-				+0.0
1,420,076	-				-0.1
1,420,076	-				-0.5
1,420,076	-				-0.6
1,420,234	+		LRK54_RS06605	0.24	+1.1
1,420,234	+		LRK54_RS06605	0.24	-0.3
1,420,234	+		LRK54_RS06605	0.24	+0.6
1,420,234	+		LRK54_RS06605	0.24	-0.2
1,420,234	+		LRK54_RS06605	0.24	+0.4
1,420,234	+		LRK54_RS06605	0.24	-1.3
1,420,234	+		LRK54_RS06605	0.24	-0.7
1,420,235	-		LRK54_RS06605	0.24	+0.1
1,420,235	-		LRK54_RS06605	0.24	+0.4
1,420,235	-		LRK54_RS06605	0.24	-0.6
1,420,235	-		LRK54_RS06605	0.24	-0.2
1,420,591	+		LRK54_RS06605	0.82	-0.8
1,420,591	+		LRK54_RS06605	0.82	+0.1
1,420,591	+		LRK54_RS06605	0.82	-0.1
1,420,591	+		LRK54_RS06605	0.82	+0.1
1,420,662	+				-0.6
1,420,662	+				+1.1
1,420,662	+				-0.0
1,420,662	+				-2.8
1,420,662	+				-0.3
1,420,662	+				-1.0
1,420,663	-				-1.9
1,420,663	-				-0.0
1,420,663	-				+0.9
1,420,663	-				+0.8
1,420,663	-				+1.0
1,420,663	-				-1.4
1,420,663	-				-0.4
1,420,663	-				+0.9
1,420,663	-				-0.1
1,420,663	-				+0.9
1,420,708	+				+0.2
1,420,708	+				-0.1
1,420,708	+				+1.1
1,420,708	+				-0.9
1,420,708	+				+0.1
1,420,708	+				+0.4
1,420,709	-				+0.2
1,420,709	-				-1.1
1,420,709	-				-0.1
1,420,709	-				+1.4
1,421,114	+		LRK54_RS06610	0.26	-1.1
1,421,114	+		LRK54_RS06610	0.26	-0.4
1,421,114	+		LRK54_RS06610	0.26	-1.6
1,421,114	+		LRK54_RS06610	0.26	-1.4
1,421,114	+		LRK54_RS06610	0.26	-1.8
1,421,114	+		LRK54_RS06610	0.26	-0.4
1,421,114	+		LRK54_RS06610	0.26	-1.9
1,421,114	+		LRK54_RS06610	0.26	-1.9
1,421,114	+		LRK54_RS06610	0.26	-1.1
1,421,114	+		LRK54_RS06610	0.26	-1.4
1,421,114	+		LRK54_RS06610	0.26	-0.8
1,421,114	+		LRK54_RS06610	0.26	-0.6
1,421,114	+		LRK54_RS06610	0.26	-1.6
1,421,114	+		LRK54_RS06610	0.26	+0.1
1,421,114	+		LRK54_RS06610	0.26	+0.9
1,421,115	-		LRK54_RS06610	0.26	-0.9
1,421,115	-		LRK54_RS06610	0.26	-0.3
1,421,115	-		LRK54_RS06610	0.26	-0.1
1,421,115	-		LRK54_RS06610	0.26	+0.1
1,421,115	-		LRK54_RS06610	0.26	-2.2
1,421,115	-		LRK54_RS06610	0.26	-1.6
1,421,115	-		LRK54_RS06610	0.26	-1.6
1,421,115	-		LRK54_RS06610	0.26	-1.6
1,421,534	+		LRK54_RS06610	0.54	-0.1
1,421,534	+		LRK54_RS06610	0.54	-2.6
1,421,534	+		LRK54_RS06610	0.54	-1.7
1,421,534	+		LRK54_RS06610	0.54	-0.8
1,421,534	+		LRK54_RS06610	0.54	+0.9
1,421,534	+		LRK54_RS06610	0.54	-1.4
1,421,534	+		LRK54_RS06610	0.54	-3.0
1,421,534	+		LRK54_RS06610	0.54	-0.8
1,421,535	-		LRK54_RS06610	0.54	-0.4
1,421,535	-		LRK54_RS06610	0.54	+0.9
1,421,570	+		LRK54_RS06610	0.56	-1.1
1,421,571	-		LRK54_RS06610	0.57	-0.4
1,421,612	+		LRK54_RS06610	0.59	-2.1
1,421,612	+		LRK54_RS06610	0.59	-0.3
1,421,612	+		LRK54_RS06610	0.59	-4.0
1,421,612	+		LRK54_RS06610	0.59	-1.4
1,421,612	+		LRK54_RS06610	0.59	-0.9
1,421,612	+		LRK54_RS06610	0.59	+0.1
1,421,612	+		LRK54_RS06610	0.59	-1.2
1,421,612	+		LRK54_RS06610	0.59	-1.6
1,421,613	-		LRK54_RS06610	0.59	-0.6
1,421,613	-		LRK54_RS06610	0.59	-0.6
1,421,613	-		LRK54_RS06610	0.59	-0.8
1,421,613	-		LRK54_RS06610	0.59	-2.7
1,421,613	-		LRK54_RS06610	0.59	-1.0
1,421,613	-		LRK54_RS06610	0.59	+1.4
1,421,613	-		LRK54_RS06610	0.59	-1.0
1,421,613	-		LRK54_RS06610	0.59	-0.7
1,421,613	-		LRK54_RS06610	0.59	-0.1
1,421,613	-		LRK54_RS06610	0.59	-0.6