Experiment: R2A with A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21125 and CA265_RS21130 are separated by 36 nucleotides CA265_RS21130 and CA265_RS21135 are separated by 494 nucleotides
CA265_RS21125: CA265_RS21125 - tRNA dihydrouridine synthase DusB, at 5,203,496 to 5,204,503
_RS21125
CA265_RS21130: CA265_RS21130 - Co2+/Mg2+ efflux protein ApaG, at 5,204,540 to 5,204,926
_RS21130
CA265_RS21135: CA265_RS21135 - hypothetical protein, at 5,205,421 to 5,206,116
_RS21135
Position (kb) 5204
5205 Strain fitness (log2 ratio) -1
0
1 at 5203.563 kb on + strand at 5203.564 kb on - strand at 5203.583 kb on + strand at 5203.584 kb on - strand at 5203.587 kb on + strand at 5203.588 kb on - strand at 5203.616 kb on + strand, within CA265_RS21125 at 5203.616 kb on + strand, within CA265_RS21125 at 5203.617 kb on - strand, within CA265_RS21125 at 5203.796 kb on + strand, within CA265_RS21125 at 5203.819 kb on - strand, within CA265_RS21125 at 5203.822 kb on - strand, within CA265_RS21125 at 5203.826 kb on - strand, within CA265_RS21125 at 5203.888 kb on - strand, within CA265_RS21125 at 5203.891 kb on + strand, within CA265_RS21125 at 5203.891 kb on + strand, within CA265_RS21125 at 5203.892 kb on - strand, within CA265_RS21125 at 5203.892 kb on - strand, within CA265_RS21125 at 5203.906 kb on - strand, within CA265_RS21125 at 5203.912 kb on + strand, within CA265_RS21125 at 5204.031 kb on + strand, within CA265_RS21125 at 5204.031 kb on + strand, within CA265_RS21125 at 5204.032 kb on - strand, within CA265_RS21125 at 5204.119 kb on - strand, within CA265_RS21125 at 5204.141 kb on - strand, within CA265_RS21125 at 5204.163 kb on + strand, within CA265_RS21125 at 5204.164 kb on - strand, within CA265_RS21125 at 5204.221 kb on - strand, within CA265_RS21125 at 5204.276 kb on - strand, within CA265_RS21125 at 5204.302 kb on + strand, within CA265_RS21125 at 5204.366 kb on + strand, within CA265_RS21125 at 5204.402 kb on - strand, within CA265_RS21125 at 5204.426 kb on - strand at 5204.438 kb on + strand at 5204.477 kb on + strand at 5204.478 kb on - strand at 5204.523 kb on + strand at 5204.551 kb on + strand at 5204.552 kb on - strand at 5204.624 kb on + strand, within CA265_RS21130 at 5204.624 kb on + strand, within CA265_RS21130 at 5204.624 kb on + strand, within CA265_RS21130 at 5204.626 kb on + strand, within CA265_RS21130 at 5204.626 kb on + strand, within CA265_RS21130 at 5204.626 kb on + strand, within CA265_RS21130 at 5204.626 kb on + strand, within CA265_RS21130 at 5204.627 kb on - strand, within CA265_RS21130 at 5204.667 kb on - strand, within CA265_RS21130 at 5204.667 kb on - strand, within CA265_RS21130 at 5204.754 kb on + strand, within CA265_RS21130 at 5204.754 kb on + strand, within CA265_RS21130 at 5204.755 kb on - strand, within CA265_RS21130 at 5204.787 kb on + strand, within CA265_RS21130 at 5204.787 kb on + strand, within CA265_RS21130 at 5204.788 kb on - strand, within CA265_RS21130 at 5204.789 kb on + strand, within CA265_RS21130 at 5204.789 kb on + strand, within CA265_RS21130 at 5204.790 kb on - strand, within CA265_RS21130 at 5204.790 kb on - strand, within CA265_RS21130 at 5204.912 kb on + strand at 5204.913 kb on - strand at 5204.924 kb on + strand at 5204.925 kb on - strand at 5204.989 kb on + strand at 5205.071 kb on + strand at 5205.167 kb on - strand at 5205.167 kb on - strand at 5205.173 kb on + strand at 5205.190 kb on - strand at 5205.197 kb on + strand at 5205.214 kb on - strand at 5205.222 kb on + strand at 5205.223 kb on - strand at 5205.223 kb on - strand at 5205.226 kb on - strand at 5205.227 kb on + strand at 5205.227 kb on + strand at 5205.231 kb on + strand at 5205.232 kb on - strand at 5205.232 kb on - strand at 5205.455 kb on + strand at 5205.463 kb on + strand at 5205.481 kb on + strand at 5205.482 kb on - strand at 5205.497 kb on + strand, within CA265_RS21135 at 5205.498 kb on - strand, within CA265_RS21135 at 5205.630 kb on + strand, within CA265_RS21135 at 5205.630 kb on + strand, within CA265_RS21135 at 5205.630 kb on + strand, within CA265_RS21135 at 5205.661 kb on + strand, within CA265_RS21135 at 5205.710 kb on - strand, within CA265_RS21135 at 5205.734 kb on - strand, within CA265_RS21135 at 5205.749 kb on - strand, within CA265_RS21135 at 5205.750 kb on + strand, within CA265_RS21135 at 5205.755 kb on - strand, within CA265_RS21135 at 5205.755 kb on - strand, within CA265_RS21135 at 5205.779 kb on - strand, within CA265_RS21135 at 5205.811 kb on + strand, within CA265_RS21135 at 5205.871 kb on + strand, within CA265_RS21135 at 5205.871 kb on + strand, within CA265_RS21135 at 5205.872 kb on - strand, within CA265_RS21135 at 5205.872 kb on - strand, within CA265_RS21135 at 5205.888 kb on + strand, within CA265_RS21135 at 5205.889 kb on - strand, within CA265_RS21135 at 5205.898 kb on - strand, within CA265_RS21135 at 5205.911 kb on + strand, within CA265_RS21135
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.02 mg/ml remove 5,203,563 + -0.6 5,203,564 - +0.4 5,203,583 + +0.3 5,203,584 - +0.2 5,203,587 + +0.5 5,203,588 - -1.0 5,203,616 + CA265_RS21125 0.12 +0.3 5,203,616 + CA265_RS21125 0.12 +1.5 5,203,617 - CA265_RS21125 0.12 -0.2 5,203,796 + CA265_RS21125 0.30 -0.4 5,203,819 - CA265_RS21125 0.32 +0.5 5,203,822 - CA265_RS21125 0.32 -0.1 5,203,826 - CA265_RS21125 0.33 +0.0 5,203,888 - CA265_RS21125 0.39 -0.7 5,203,891 + CA265_RS21125 0.39 -0.4 5,203,891 + CA265_RS21125 0.39 -0.1 5,203,892 - CA265_RS21125 0.39 -0.2 5,203,892 - CA265_RS21125 0.39 +0.1 5,203,906 - CA265_RS21125 0.41 -1.0 5,203,912 + CA265_RS21125 0.41 -0.5 5,204,031 + CA265_RS21125 0.53 +0.5 5,204,031 + CA265_RS21125 0.53 -0.6 5,204,032 - CA265_RS21125 0.53 -1.1 5,204,119 - CA265_RS21125 0.62 +0.6 5,204,141 - CA265_RS21125 0.64 -0.7 5,204,163 + CA265_RS21125 0.66 -0.9 5,204,164 - CA265_RS21125 0.66 -0.6 5,204,221 - CA265_RS21125 0.72 +0.6 5,204,276 - CA265_RS21125 0.77 -0.4 5,204,302 + CA265_RS21125 0.80 -0.2 5,204,366 + CA265_RS21125 0.86 +0.4 5,204,402 - CA265_RS21125 0.90 +0.6 5,204,426 - +0.5 5,204,438 + -0.6 5,204,477 + +0.5 5,204,478 - +0.3 5,204,523 + +0.9 5,204,551 + -0.0 5,204,552 - +0.1 5,204,624 + CA265_RS21130 0.22 +0.3 5,204,624 + CA265_RS21130 0.22 +0.4 5,204,624 + CA265_RS21130 0.22 -0.0 5,204,626 + CA265_RS21130 0.22 +0.7 5,204,626 + CA265_RS21130 0.22 +0.3 5,204,626 + CA265_RS21130 0.22 -0.3 5,204,626 + CA265_RS21130 0.22 -0.5 5,204,627 - CA265_RS21130 0.22 +0.1 5,204,667 - CA265_RS21130 0.33 -0.8 5,204,667 - CA265_RS21130 0.33 -0.6 5,204,754 + CA265_RS21130 0.55 +1.4 5,204,754 + CA265_RS21130 0.55 +0.9 5,204,755 - CA265_RS21130 0.56 +0.3 5,204,787 + CA265_RS21130 0.64 -0.5 5,204,787 + CA265_RS21130 0.64 +1.3 5,204,788 - CA265_RS21130 0.64 +0.0 5,204,789 + CA265_RS21130 0.64 +0.1 5,204,789 + CA265_RS21130 0.64 +0.4 5,204,790 - CA265_RS21130 0.65 +0.1 5,204,790 - CA265_RS21130 0.65 +0.3 5,204,912 + +0.6 5,204,913 - +0.6 5,204,924 + -0.6 5,204,925 - -0.5 5,204,989 + -0.5 5,205,071 + +0.0 5,205,167 - +0.6 5,205,167 - -0.6 5,205,173 + +0.5 5,205,190 - -0.1 5,205,197 + +0.2 5,205,214 - -1.1 5,205,222 + -0.6 5,205,223 - +0.4 5,205,223 - +0.0 5,205,226 - +1.1 5,205,227 + +0.2 5,205,227 + +0.4 5,205,231 + -0.1 5,205,232 - -0.7 5,205,232 - -1.3 5,205,455 + -1.0 5,205,463 + -0.6 5,205,481 + -1.4 5,205,482 - +0.4 5,205,497 + CA265_RS21135 0.11 -0.1 5,205,498 - CA265_RS21135 0.11 +0.0 5,205,630 + CA265_RS21135 0.30 -0.2 5,205,630 + CA265_RS21135 0.30 -0.0 5,205,630 + CA265_RS21135 0.30 -1.2 5,205,661 + CA265_RS21135 0.34 +0.1 5,205,710 - CA265_RS21135 0.42 -0.7 5,205,734 - CA265_RS21135 0.45 -0.8 5,205,749 - CA265_RS21135 0.47 -0.3 5,205,750 + CA265_RS21135 0.47 +0.9 5,205,755 - CA265_RS21135 0.48 -1.7 5,205,755 - CA265_RS21135 0.48 -0.6 5,205,779 - CA265_RS21135 0.51 -1.5 5,205,811 + CA265_RS21135 0.56 -0.1 5,205,871 + CA265_RS21135 0.65 -0.6 5,205,871 + CA265_RS21135 0.65 +0.2 5,205,872 - CA265_RS21135 0.65 -1.1 5,205,872 - CA265_RS21135 0.65 +0.4 5,205,888 + CA265_RS21135 0.67 -1.4 5,205,889 - CA265_RS21135 0.67 -1.0 5,205,898 - CA265_RS21135 0.69 +0.4 5,205,911 + CA265_RS21135 0.70 +0.4
Or see this region's nucleotide sequence