Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19185

Experiment: R2A with A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.02 mg/ml
4,768,363	+		CA265_RS19180	0.41	-1.6
4,768,408	-		CA265_RS19180	0.44	+0.2
4,768,408	-		CA265_RS19180	0.44	-0.1
4,768,412	-		CA265_RS19180	0.44	-1.9
4,768,509	+		CA265_RS19180	0.50	-0.5
4,768,510	-		CA265_RS19180	0.50	-1.7
4,768,565	-		CA265_RS19180	0.53	-1.2
4,768,586	-		CA265_RS19180	0.55	-0.3
4,768,586	-		CA265_RS19180	0.55	-1.2
4,768,588	-		CA265_RS19180	0.55	-1.9
4,768,636	+		CA265_RS19180	0.58	-1.0
4,768,648	-		CA265_RS19180	0.58	-1.0
4,768,651	+		CA265_RS19180	0.59	-0.8
4,768,667	+		CA265_RS19180	0.60	-1.5
4,768,670	+		CA265_RS19180	0.60	+0.2
4,768,731	+		CA265_RS19180	0.64	-0.7
4,768,731	+		CA265_RS19180	0.64	+0.5
4,768,732	-		CA265_RS19180	0.64	-0.3
4,768,732	-		CA265_RS19180	0.64	-0.9
4,768,755	-		CA265_RS19180	0.65	-0.6
4,768,755	-		CA265_RS19180	0.65	-3.2
4,768,763	-		CA265_RS19180	0.66	-2.2
4,768,767	+		CA265_RS19180	0.66	-0.9
4,768,768	-		CA265_RS19180	0.66	-0.7
4,768,843	+		CA265_RS19180	0.71	-1.1
4,768,844	-		CA265_RS19180	0.71	-0.0
4,768,847	+		CA265_RS19180	0.71	-0.1
4,768,848	-		CA265_RS19180	0.71	-0.5
4,768,886	+		CA265_RS19180	0.73	-1.3
4,768,886	+		CA265_RS19180	0.73	-0.3
4,768,940	-		CA265_RS19180	0.77	-1.1
4,768,940	-		CA265_RS19180	0.77	-1.7
4,769,007	+		CA265_RS19180	0.81	-0.0
4,769,016	+		CA265_RS19180	0.81	-2.2
4,769,099	+		CA265_RS19180	0.86	-0.4
4,769,138	-		CA265_RS19180	0.89	+0.5
4,769,230	-				-0.2
4,769,337	-				-0.1
4,769,337	-				-0.9
4,769,375	-				-1.6
4,769,375	-				-1.6
4,769,398	+				+0.2
4,769,420	-				-1.8
4,769,420	-				-2.1
4,769,451	+				-2.8
4,769,465	+				-1.6
4,769,495	-				-1.9
4,769,521	+		CA265_RS19185	0.10	-2.6
4,769,672	-		CA265_RS19185	0.18	-3.1
4,769,748	-		CA265_RS19185	0.22	-2.3
4,769,893	+		CA265_RS19185	0.29	-0.5
4,769,911	+		CA265_RS19185	0.30	-1.2
4,769,911	+		CA265_RS19185	0.30	-1.0
4,769,956	-		CA265_RS19185	0.33	-1.0
4,770,038	-		CA265_RS19185	0.37	-2.1
4,770,160	-		CA265_RS19185	0.43	-1.2
4,770,175	-		CA265_RS19185	0.44	-1.8
4,770,176	+		CA265_RS19185	0.44	-1.6
4,770,176	+		CA265_RS19185	0.44	-0.8
4,770,176	+		CA265_RS19185	0.44	-1.0
4,770,176	+		CA265_RS19185	0.44	-3.1
4,770,176	+		CA265_RS19185	0.44	-0.0
4,770,177	-		CA265_RS19185	0.44	-0.6
4,770,177	-		CA265_RS19185	0.44	-3.5
4,770,177	-		CA265_RS19185	0.44	-1.3
4,770,177	-		CA265_RS19185	0.44	-0.3
4,770,180	+		CA265_RS19185	0.44	-0.0
4,770,180	+		CA265_RS19185	0.44	-1.2
4,770,208	+		CA265_RS19185	0.46	-2.4
4,770,259	+		CA265_RS19185	0.48	-0.6
4,770,260	-		CA265_RS19185	0.48	-0.5
4,770,470	+		CA265_RS19185	0.59	+0.4
4,770,470	+		CA265_RS19185	0.59	-0.1
4,770,471	-		CA265_RS19185	0.59	-1.5
4,770,549	-		CA265_RS19185	0.63	-1.4
4,770,613	+		CA265_RS19185	0.66	-2.1
4,770,615	+		CA265_RS19185	0.67	-2.9
4,770,638	+		CA265_RS19185	0.68	-1.4
4,770,661	-		CA265_RS19185	0.69	-0.2
4,770,661	-		CA265_RS19185	0.69	-1.6
4,770,661	-		CA265_RS19185	0.69	+0.2
4,770,661	-		CA265_RS19185	0.69	+0.4
4,770,711	-		CA265_RS19185	0.71	-0.6
4,770,746	-		CA265_RS19185	0.73	-1.0
4,770,746	-		CA265_RS19185	0.73	+0.4
4,770,842	-		CA265_RS19185	0.78	-2.5
4,770,855	+		CA265_RS19185	0.79	-3.2
4,770,871	+		CA265_RS19185	0.80	+0.2
4,770,886	-		CA265_RS19185	0.80	-2.7
4,771,009	+		CA265_RS19185	0.87	-1.5
4,771,019	+		CA265_RS19185	0.87	-1.9
4,771,045	+		CA265_RS19185	0.89	-4.2
4,771,045	+		CA265_RS19185	0.89	+1.0
4,771,045	+		CA265_RS19185	0.89	+0.4
4,771,046	-		CA265_RS19185	0.89	-2.5
4,771,060	+		CA265_RS19185	0.89	-1.0
4,771,067	-		CA265_RS19185	0.90	-1.4
4,771,068	+		CA265_RS19185	0.90	-2.4
4,771,068	+		CA265_RS19185	0.90	-1.6
4,771,069	-		CA265_RS19185	0.90	-4.1
4,771,075	+				-2.1
4,771,078	+				-1.1
4,771,079	-				-1.2
4,771,099	+				-0.8
4,771,099	+				-1.3
4,771,100	-				-0.6
4,771,154	+				-0.5
4,771,166	-				-3.3
4,771,166	-				-1.0
4,771,267	+				-1.6
4,771,273	-				-0.7
4,771,293	+				-2.9
4,771,294	-				+0.1
4,771,300	+				-0.8
4,771,300	+				-2.5
4,771,301	-				+0.1
4,771,314	+				-0.5
4,771,314	+				-1.3
4,771,401	-		CA265_RS19190	0.17	-0.1
4,771,435	-		CA265_RS19190	0.23	+0.7
4,771,448	+		CA265_RS19190	0.25	-0.8
4,771,448	+		CA265_RS19190	0.25	-0.3
4,771,448	+		CA265_RS19190	0.25	-0.4
4,771,449	-		CA265_RS19190	0.25	+0.3
4,771,449	-		CA265_RS19190	0.25	+0.4
4,771,450	+		CA265_RS19190	0.26	+0.7
4,771,491	-		CA265_RS19190	0.33	+0.5
4,771,598	-		CA265_RS19190	0.52	+0.8
4,771,598	-		CA265_RS19190	0.52	+0.3
4,771,631	+		CA265_RS19190	0.58	+2.0
4,771,631	+		CA265_RS19190	0.58	-0.2
4,771,632	-		CA265_RS19190	0.59	-0.7
4,771,636	+		CA265_RS19190	0.59	-0.9
4,771,637	-		CA265_RS19190	0.60	+1.1
4,771,659	-		CA265_RS19190	0.64	-0.3
4,771,669	+		CA265_RS19190	0.65	+0.2
4,771,756	+		CA265_RS19190	0.81	-0.1
4,771,757	-		CA265_RS19190	0.81	-0.7
4,771,863	+				-1.8
4,771,864	-				+0.7
4,772,116	-		CA265_RS19195	0.27	-0.6
4,772,152	+		CA265_RS19195	0.31	-2.1
4,772,152	+		CA265_RS19195	0.31	-1.0
4,772,172	-		CA265_RS19195	0.33	-0.2
4,772,217	+		CA265_RS19195	0.37	-0.5
4,772,239	-		CA265_RS19195	0.40	-3.6
4,772,248	-		CA265_RS19195	0.40	-2.3