Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18745

Experiment: R2A with A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS18740 and CA265_RS18745 are separated by 150 nucleotidesCA265_RS18745 and CA265_RS18750 are separated by 158 nucleotidesCA265_RS18750 and CA265_RS18755 are separated by 21 nucleotides CA265_RS18740: CA265_RS18740 - pyruvate kinase, at 4,666,010 to 4,667,440 _RS18740 CA265_RS18745: CA265_RS18745 - hypothetical protein, at 4,667,591 to 4,668,010 _RS18745 CA265_RS18750: CA265_RS18750 - acyl carrier protein, at 4,668,169 to 4,668,405 _RS18750 CA265_RS18755: CA265_RS18755 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 4,668,427 to 4,669,680 _RS18755 Position (kb) 4667 4668 4669Strain fitness (log2 ratio) -2 -1 0 1at 4667.480 kb on - strandat 4667.585 kb on + strandat 4667.786 kb on + strand, within CA265_RS18745at 4667.790 kb on + strand, within CA265_RS18745at 4667.934 kb on + strand, within CA265_RS18745at 4668.055 kb on - strandat 4668.651 kb on - strand, within CA265_RS18755at 4668.651 kb on - strand, within CA265_RS18755at 4668.734 kb on + strand, within CA265_RS18755at 4668.880 kb on + strand, within CA265_RS18755at 4668.954 kb on + strand, within CA265_RS18755

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.02 mg/ml
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4,667,480 - -0.3
4,667,585 + +0.6
4,667,786 + CA265_RS18745 0.46 -1.1
4,667,790 + CA265_RS18745 0.47 -1.6
4,667,934 + CA265_RS18745 0.82 -1.6
4,668,055 - -0.5
4,668,651 - CA265_RS18755 0.18 +0.4
4,668,651 - CA265_RS18755 0.18 +0.9
4,668,734 + CA265_RS18755 0.24 -0.1
4,668,880 + CA265_RS18755 0.36 -2.1
4,668,954 + CA265_RS18755 0.42 -0.6

Or see this region's nucleotide sequence