Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18235

Experiment: R2A with A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.02 mg/ml
4,545,872	+		CA265_RS18230	0.41	+0.1
4,545,926	-		CA265_RS18230	0.44	-1.5
4,545,928	-		CA265_RS18230	0.44	-2.5
4,546,013	+		CA265_RS18230	0.49	-1.4
4,546,014	-		CA265_RS18230	0.49	-1.5
4,546,089	+		CA265_RS18230	0.54	-0.1
4,546,131	-		CA265_RS18230	0.56	-0.2
4,546,144	-		CA265_RS18230	0.57	-1.1
4,546,220	+		CA265_RS18230	0.62	+0.9
4,546,229	-		CA265_RS18230	0.62	+0.9
4,546,236	+		CA265_RS18230	0.63	+0.6
4,546,237	-		CA265_RS18230	0.63	-2.4
4,546,256	+		CA265_RS18230	0.64	-0.2
4,546,330	-		CA265_RS18230	0.68	-1.0
4,546,430	-		CA265_RS18230	0.74	-1.6
4,546,582	-		CA265_RS18230	0.83	-2.4
4,546,614	-		CA265_RS18230	0.85	-1.1
4,546,623	+		CA265_RS18230	0.86	+0.9
4,546,636	+		CA265_RS18230	0.87	-0.1
4,546,639	+		CA265_RS18230	0.87	+1.7
4,546,678	+		CA265_RS18230	0.89	-0.1
4,546,679	-		CA265_RS18230	0.89	-1.2
4,546,688	+		CA265_RS18230	0.90	-0.0
4,546,719	+				-0.3
4,546,720	-				-2.0
4,546,749	-				-0.1
4,546,751	-				-0.1
4,546,779	-				-0.3
4,546,909	+				-1.5
4,546,969	+				+0.4
4,546,974	-				-1.3
4,547,030	+				-0.3
4,547,114	+		CA265_RS18235	0.13	+0.8
4,547,155	+		CA265_RS18235	0.15	+0.6
4,547,155	+		CA265_RS18235	0.15	-0.1
4,547,155	+		CA265_RS18235	0.15	+1.1
4,547,156	-		CA265_RS18235	0.16	-1.5
4,547,205	-		CA265_RS18235	0.18	-2.5
4,547,217	+		CA265_RS18235	0.19	-2.6
4,547,282	+		CA265_RS18235	0.22	+0.3
4,547,285	-		CA265_RS18235	0.22	-0.5
4,547,356	-		CA265_RS18235	0.26	-0.0
4,547,413	+		CA265_RS18235	0.29	-1.3
4,547,413	+		CA265_RS18235	0.29	-1.0
4,547,428	+		CA265_RS18235	0.30	-0.1
4,547,435	+		CA265_RS18235	0.30	-0.8
4,547,446	+		CA265_RS18235	0.31	-0.1
4,547,502	-		CA265_RS18235	0.34	-2.0
4,547,502	-		CA265_RS18235	0.34	-2.2
4,547,504	-		CA265_RS18235	0.34	+0.3
4,547,534	+		CA265_RS18235	0.36	+0.0
4,547,535	-		CA265_RS18235	0.36	-3.5
4,547,535	-		CA265_RS18235	0.36	-1.8
4,547,557	-		CA265_RS18235	0.37	+0.3
4,547,593	+		CA265_RS18235	0.39	-0.8
4,547,678	+		CA265_RS18235	0.43	-0.2
4,547,679	-		CA265_RS18235	0.43	-1.7
4,547,714	+		CA265_RS18235	0.45	+0.2
4,547,714	+		CA265_RS18235	0.45	+0.3
4,547,718	+		CA265_RS18235	0.45	-2.4
4,547,718	+		CA265_RS18235	0.45	-1.7
4,547,723	-		CA265_RS18235	0.46	-1.3
4,547,723	-		CA265_RS18235	0.46	-2.3
4,547,837	-		CA265_RS18235	0.52	-2.7
4,547,850	-				+1.3
4,547,940	+		CA265_RS18235	0.57	-0.5
4,547,951	+		CA265_RS18235	0.58	-2.0
4,548,018	-		CA265_RS18235	0.61	-3.2
4,548,028	-		CA265_RS18235	0.62	-2.3
4,548,043	+		CA265_RS18235	0.63	+0.6
4,548,043	+		CA265_RS18235	0.63	+0.4
4,548,044	-		CA265_RS18235	0.63	-2.7
4,548,044	-		CA265_RS18235	0.63	-2.9
4,548,048	+		CA265_RS18235	0.63	+1.5
4,548,048	+		CA265_RS18235	0.63	-1.8
4,548,048	+		CA265_RS18235	0.63	-2.3
4,548,048	+		CA265_RS18235	0.63	-1.2
4,548,049	-		CA265_RS18235	0.63	-1.4
4,548,108	-		CA265_RS18235	0.66	-2.6
4,548,249	-		CA265_RS18235	0.74	-0.6
4,548,258	-		CA265_RS18235	0.74	-2.1
4,548,324	-		CA265_RS18235	0.78	-0.9
4,548,326	+		CA265_RS18235	0.78	+0.0
4,548,327	-		CA265_RS18235	0.78	-1.6
4,548,332	+		CA265_RS18235	0.78	-0.5
4,548,342	+		CA265_RS18235	0.79	-0.8
4,548,355	-		CA265_RS18235	0.79	-0.4
4,548,368	+		CA265_RS18235	0.80	+0.4
4,548,401	+		CA265_RS18235	0.82	+0.5
4,548,402	-		CA265_RS18235	0.82	-2.1
4,548,438	-		CA265_RS18235	0.84	-1.1
4,548,447	-		CA265_RS18235	0.84	-2.2
4,548,467	-		CA265_RS18235	0.85	-0.7
4,548,480	-		CA265_RS18235	0.86	-2.1
4,548,480	-		CA265_RS18235	0.86	-3.0
4,548,674	+				-0.4
4,548,675	-				-1.8
4,548,675	-				+0.3
4,548,677	+				+0.9
4,548,695	+				-0.4
4,548,750	+				-0.1
4,548,776	-				+0.7
4,548,822	-				+0.6
4,548,836	-				-0.3
4,548,856	-				+0.2
4,548,888	+				-0.6
4,548,888	+				+0.5
4,548,936	+				+0.9
4,548,963	-				+0.2
4,548,974	+				-0.1
4,548,997	+				-0.7
4,549,081	+				+0.3
4,549,086	+				+1.0
4,549,087	-				+0.1
4,549,090	-				+1.1
4,549,090	-				+0.3
4,549,124	-				-0.1
4,549,161	+		CA265_RS18240	0.10	+0.7
4,549,170	-		CA265_RS18240	0.11	+0.3
4,549,182	-		CA265_RS18240	0.11	-0.6
4,549,182	-		CA265_RS18240	0.11	+0.2
4,549,270	+		CA265_RS18240	0.16	-0.2
4,549,276	+		CA265_RS18240	0.17	-1.7
4,549,500	-		CA265_RS18240	0.29	+0.4
4,549,508	+		CA265_RS18240	0.29	-0.1
4,549,509	-		CA265_RS18240	0.29	-0.6
4,549,684	+		CA265_RS18240	0.39	-0.3
4,549,698	+		CA265_RS18240	0.40	+0.7
4,549,740	-		CA265_RS18240	0.42	+0.1