Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15000

Experiment: R2A with A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.02 mg/ml
3,780,064	-		CA265_RS14995	0.63	-0.2
3,780,148	-		CA265_RS14995	0.67	+0.3
3,780,162	+		CA265_RS14995	0.67	-1.1
3,780,162	+		CA265_RS14995	0.67	-0.2
3,780,241	-		CA265_RS14995	0.71	-0.3
3,780,247	+		CA265_RS14995	0.71	+0.5
3,780,248	-		CA265_RS14995	0.71	-1.0
3,780,352	+		CA265_RS14995	0.76	+0.2
3,780,360	-		CA265_RS14995	0.76	+0.4
3,780,361	+		CA265_RS14995	0.76	-0.5
3,780,361	+		CA265_RS14995	0.76	-0.2
3,780,362	-		CA265_RS14995	0.76	-0.3
3,780,378	-		CA265_RS14995	0.77	+0.6
3,780,451	+		CA265_RS14995	0.80	+0.3
3,780,501	+		CA265_RS14995	0.83	-0.8
3,780,502	-		CA265_RS14995	0.83	+0.0
3,780,502	-		CA265_RS14995	0.83	-0.2
3,780,528	+		CA265_RS14995	0.84	-0.3
3,780,529	-		CA265_RS14995	0.84	-0.8
3,780,724	-				-0.1
3,780,745	+				-0.1
3,780,755	+				-0.6
3,780,756	-				+0.1
3,780,756	-				+0.5
3,780,838	-				+0.7
3,780,844	+				+0.2
3,780,909	-				-0.8
3,780,909	-				-0.1
3,780,909	-				-0.2
3,780,987	-				-0.6
3,781,004	+				-1.5
3,781,007	+				-3.2
3,781,040	-				-0.9
3,781,142	-				-0.7
3,781,216	+		CA265_RS15000	0.14	-0.3
3,781,217	-		CA265_RS15000	0.14	-2.5
3,781,237	+		CA265_RS15000	0.16	-1.4
3,781,238	-		CA265_RS15000	0.16	-0.6
3,781,285	-		CA265_RS15000	0.19	-2.8
3,781,287	-		CA265_RS15000	0.19	-0.9
3,781,287	-		CA265_RS15000	0.19	-1.2
3,781,287	-		CA265_RS15000	0.19	-1.4
3,781,290	+		CA265_RS15000	0.19	-1.2
3,781,292	+		CA265_RS15000	0.19	-0.1
3,781,296	+		CA265_RS15000	0.20	+0.3
3,781,316	-		CA265_RS15000	0.21	-1.3
3,781,354	-		CA265_RS15000	0.23	-1.6
3,781,370	+		CA265_RS15000	0.25	-1.1
3,781,375	+		CA265_RS15000	0.25	-0.5
3,781,376	-		CA265_RS15000	0.25	-1.0
3,781,376	-		CA265_RS15000	0.25	-1.4
3,781,408	+		CA265_RS15000	0.27	-2.7
3,781,409	-		CA265_RS15000	0.27	+0.5
3,781,423	+		CA265_RS15000	0.28	-1.5
3,781,424	-		CA265_RS15000	0.28	+0.2
3,781,427	+		CA265_RS15000	0.28	-2.1
3,781,427	+		CA265_RS15000	0.28	-0.8
3,781,428	-		CA265_RS15000	0.28	-1.0
3,781,490	-		CA265_RS15000	0.33	-0.8
3,781,618	+		CA265_RS15000	0.41	-1.3
3,781,689	+		CA265_RS15000	0.46	-1.4
3,781,689	+		CA265_RS15000	0.46	-1.5
3,781,812	-		CA265_RS15000	0.54	-0.8
3,781,866	-		CA265_RS15000	0.58	-1.6
3,781,873	+		CA265_RS15000	0.59	-0.2
3,781,873	+		CA265_RS15000	0.59	-1.1
3,781,874	-		CA265_RS15000	0.59	-1.1
3,781,875	+		CA265_RS15000	0.59	+0.1
3,781,876	-		CA265_RS15000	0.59	+0.3
3,781,877	+		CA265_RS15000	0.59	-1.9
3,781,951	+		CA265_RS15000	0.64	-0.8
3,781,998	-		CA265_RS15000	0.67	-0.5
3,782,003	-		CA265_RS15000	0.67	-0.6
3,782,039	-		CA265_RS15000	0.70	-0.2
3,782,176	+		CA265_RS15000	0.79	-1.8
3,782,234	+		CA265_RS15000	0.83	-0.1
3,782,235	-		CA265_RS15000	0.83	-1.1
3,782,249	+		CA265_RS15000	0.84	+1.5
3,782,270	-		CA265_RS15000	0.86	+0.8
3,782,365	+				-0.8
3,782,451	-				-0.8
3,782,538	+				+0.5
3,782,542	+				-0.0
3,782,614	+				+0.2
3,782,615	-				-0.3
3,782,659	+				-0.3
3,782,748	+		CA265_RS15005	0.13	-2.1
3,782,759	+		CA265_RS15005	0.13	-0.5
3,782,759	+		CA265_RS15005	0.13	+1.3
3,782,806	+		CA265_RS15005	0.17	+0.1
3,782,853	-		CA265_RS15005	0.20	+0.5
3,782,867	+		CA265_RS15005	0.21	-0.3
3,782,878	+		CA265_RS15005	0.22	-0.3
3,782,878	+		CA265_RS15005	0.22	+0.2
3,782,878	+		CA265_RS15005	0.22	-0.1
3,782,878	+		CA265_RS15005	0.22	+1.9
3,782,879	-		CA265_RS15005	0.22	+1.2
3,782,879	-		CA265_RS15005	0.22	-0.6
3,782,880	+		CA265_RS15005	0.22	-0.6
3,782,910	+		CA265_RS15005	0.25	-0.1
3,782,914	+		CA265_RS15005	0.25	-0.1
3,782,977	+		CA265_RS15005	0.30	+0.2
3,782,978	-		CA265_RS15005	0.30	-2.3
3,782,981	-		CA265_RS15005	0.30	-0.1
3,782,988	+		CA265_RS15005	0.31	+0.3
3,782,988	+		CA265_RS15005	0.31	-0.3
3,783,132	+		CA265_RS15005	0.41	+0.2
3,783,133	-		CA265_RS15005	0.41	+0.3
3,783,139	-		CA265_RS15005	0.42	+0.1
3,783,199	+		CA265_RS15005	0.46	-0.2
3,783,244	-		CA265_RS15005	0.50	+0.2
3,783,299	+		CA265_RS15005	0.54	+1.1
3,783,300	-		CA265_RS15005	0.54	-0.3
3,783,315	+		CA265_RS15005	0.55	+0.5
3,783,321	-		CA265_RS15005	0.56	+1.2
3,783,356	-		CA265_RS15005	0.58	+0.5
3,783,440	-		CA265_RS15005	0.64	+0.2
3,783,440	-		CA265_RS15005	0.64	-0.2
3,783,442	+		CA265_RS15005	0.65	-0.4
3,783,443	-		CA265_RS15005	0.65	+0.0
3,783,466	-		CA265_RS15005	0.66	-0.2