Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10910

Experiment: R2A with A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.02 mg/ml
2,683,151	+		CA265_RS10900	0.59	+0.1
2,683,172	+		CA265_RS10900	0.63	-1.3
2,683,195	+		CA265_RS10900	0.68	-0.4
2,683,196	-		CA265_RS10900	0.68	-1.0
2,683,197	+		CA265_RS10900	0.68	-0.4
2,683,198	-		CA265_RS10900	0.69	-0.6
2,683,198	-		CA265_RS10900	0.69	+0.3
2,683,331	+				+0.1
2,683,346	-				-0.1
2,683,501	+				+0.6
2,683,625	-		CA265_RS10905	0.23	-0.2
2,683,634	+		CA265_RS10905	0.24	+0.6
2,683,638	-		CA265_RS10905	0.25	-1.7
2,683,653	-		CA265_RS10905	0.27	+0.5
2,683,697	+		CA265_RS10905	0.34	+0.3
2,683,784	+		CA265_RS10905	0.47	-0.1
2,683,868	+		CA265_RS10905	0.60	+0.0
2,683,898	+		CA265_RS10905	0.64	-0.4
2,684,050	+		CA265_RS10905	0.87	-1.2
2,684,111	-				-2.1
2,684,151	-				+0.2
2,684,162	+				-1.2
2,684,166	+				-0.5
2,684,223	-				-0.5
2,684,237	-				-0.5
2,684,281	-				-0.3
2,684,297	+				-1.9
2,684,298	-				-2.9
2,684,339	+		CA265_RS10910	0.12	-0.8
2,684,340	-		CA265_RS10910	0.12	-0.6
2,684,348	+		CA265_RS10910	0.12	-0.9
2,684,349	-		CA265_RS10910	0.12	-0.3
2,684,564	+		CA265_RS10910	0.24	-0.9
2,684,667	-		CA265_RS10910	0.29	-1.4
2,684,679	+		CA265_RS10910	0.30	-1.4
2,684,710	-		CA265_RS10910	0.32	-1.2
2,684,715	-		CA265_RS10910	0.32	-1.2
2,684,715	-		CA265_RS10910	0.32	-1.1
2,684,734	-		CA265_RS10910	0.33	-2.5
2,684,780	-		CA265_RS10910	0.35	-0.9
2,684,783	+		CA265_RS10910	0.35	-1.6
2,684,784	-		CA265_RS10910	0.35	-1.3
2,684,784	-		CA265_RS10910	0.35	-0.7
2,684,784	-		CA265_RS10910	0.35	-0.8
2,684,821	-		CA265_RS10910	0.37	+0.5
2,684,821	-		CA265_RS10910	0.37	+0.3
2,684,879	+		CA265_RS10910	0.41	-1.1
2,684,909	+		CA265_RS10910	0.42	-1.6
2,684,916	-		CA265_RS10910	0.43	+1.5
2,684,948	+		CA265_RS10910	0.44	-0.9
2,684,949	-		CA265_RS10910	0.44	-0.3
2,685,009	-		CA265_RS10910	0.48	-0.9
2,685,020	+		CA265_RS10910	0.48	-1.5
2,685,028	-		CA265_RS10910	0.49	-0.5
2,685,029	+		CA265_RS10910	0.49	-1.1
2,685,111	-		CA265_RS10910	0.53	-0.8
2,685,182	+		CA265_RS10910	0.57	+0.3
2,685,183	-		CA265_RS10910	0.57	-0.2
2,685,188	-		CA265_RS10910	0.57	-0.3
2,685,216	-		CA265_RS10910	0.59	-1.1
2,685,216	-		CA265_RS10910	0.59	-1.2
2,685,234	-		CA265_RS10910	0.60	-1.1
2,685,354	-				+0.7
2,685,357	+		CA265_RS10910	0.66	-1.3
2,685,357	+		CA265_RS10910	0.66	-1.7
2,685,357	+		CA265_RS10910	0.66	-1.7
2,685,358	-		CA265_RS10910	0.66	-0.7
2,685,358	-		CA265_RS10910	0.66	-0.1
2,685,374	+		CA265_RS10910	0.67	-0.3
2,685,396	-		CA265_RS10910	0.68	-1.0
2,685,396	-		CA265_RS10910	0.68	-1.0
2,685,421	-		CA265_RS10910	0.70	-0.1
2,685,554	+		CA265_RS10910	0.77	-0.5
2,685,558	+		CA265_RS10910	0.77	-0.7
2,685,570	-		CA265_RS10910	0.78	+0.0
2,685,673	+		CA265_RS10910	0.83	+0.4
2,685,674	-		CA265_RS10910	0.83	+0.2
2,685,676	+		CA265_RS10910	0.83	-2.0
2,685,728	+		CA265_RS10910	0.86	+0.3
2,685,729	-		CA265_RS10910	0.86	-0.3
2,685,879	-				+0.5
2,685,879	-				-0.1
2,685,903	+				-0.5
2,685,903	+				+0.4
2,685,904	-				-0.4
2,685,921	+				+1.2
2,685,960	-				-0.4
2,686,034	+				-0.1
2,686,060	+				-0.0
2,686,077	+				-0.5
2,686,077	+				-0.4
2,686,151	-		CA265_RS10915	0.18	-1.3
2,686,154	+		CA265_RS10915	0.19	-0.7
2,686,154	+		CA265_RS10915	0.19	+0.4
2,686,154	+		CA265_RS10915	0.19	-1.1
2,686,219	-		CA265_RS10915	0.32	+0.1
2,686,219	-		CA265_RS10915	0.32	+0.2
2,686,223	+		CA265_RS10915	0.33	-0.9
2,686,236	+		CA265_RS10915	0.36	-0.9
2,686,276	+		CA265_RS10915	0.44	-0.9
2,686,277	-		CA265_RS10915	0.44	-0.0
2,686,293	-		CA265_RS10915	0.47	+0.0
2,686,293	-		CA265_RS10915	0.47	-0.3
2,686,300	+		CA265_RS10915	0.49	-0.8
2,686,317	-		CA265_RS10915	0.53	-0.1
2,686,450	+		CA265_RS10915	0.80	+0.2
2,686,594	+				-0.2
2,686,596	+				+0.4
2,686,597	-				-0.0
2,686,817	+				-1.3
2,686,818	-				-1.9
2,686,835	+				-0.0
2,686,840	-				+0.1
2,686,973	-				+0.5