Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS09385

Experiment: R2A with A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.02 mg/ml
2,328,768	+		CA265_RS09380	0.33	+0.1
2,328,773	+		CA265_RS09380	0.34	-0.0
2,328,784	-		CA265_RS09380	0.35	-1.8
2,328,784	-		CA265_RS09380	0.35	-0.0
2,328,804	+		CA265_RS09380	0.36	-0.2
2,328,804	+		CA265_RS09380	0.36	-0.5
2,328,808	-		CA265_RS09380	0.36	-0.4
2,328,826	+		CA265_RS09380	0.38	-0.2
2,328,827	-		CA265_RS09380	0.38	-0.3
2,328,848	+		CA265_RS09380	0.40	+0.1
2,328,849	-		CA265_RS09380	0.40	-1.2
2,328,849	-		CA265_RS09380	0.40	-1.4
2,328,868	+		CA265_RS09380	0.41	-0.2
2,328,880	+		CA265_RS09380	0.42	+1.0
2,328,930	+		CA265_RS09380	0.46	+0.5
2,328,931	-		CA265_RS09380	0.46	-1.2
2,328,952	+		CA265_RS09380	0.48	-0.9
2,328,952	+		CA265_RS09380	0.48	-1.5
2,328,958	+		CA265_RS09380	0.48	-0.6
2,328,965	+		CA265_RS09380	0.49	+0.2
2,328,965	+		CA265_RS09380	0.49	+0.3
2,328,966	-		CA265_RS09380	0.49	-0.8
2,328,969	+		CA265_RS09380	0.49	-0.1
2,328,999	+		CA265_RS09380	0.51	-0.0
2,328,999	+		CA265_RS09380	0.51	+0.3
2,329,008	+		CA265_RS09380	0.52	+0.6
2,329,052	+		CA265_RS09380	0.56	-0.4
2,329,076	+		CA265_RS09380	0.57	+0.3
2,329,098	+		CA265_RS09380	0.59	-0.4
2,329,176	+		CA265_RS09380	0.65	+0.4
2,329,176	+		CA265_RS09380	0.65	+0.1
2,329,190	-		CA265_RS09380	0.66	-0.7
2,329,234	+		CA265_RS09380	0.70	-0.6
2,329,234	+		CA265_RS09380	0.70	-0.2
2,329,235	-		CA265_RS09380	0.70	-0.6
2,329,235	-		CA265_RS09380	0.70	-1.3
2,329,260	+		CA265_RS09380	0.72	+1.1
2,329,261	-		CA265_RS09380	0.72	-0.9
2,329,264	+		CA265_RS09380	0.72	+0.9
2,329,282	+		CA265_RS09380	0.74	+0.3
2,329,303	+		CA265_RS09380	0.75	+1.0
2,329,371	+		CA265_RS09380	0.81	+2.2
2,329,373	+		CA265_RS09380	0.81	+0.1
2,329,465	+		CA265_RS09380	0.88	-0.1
2,329,608	+				-0.3
2,329,609	-				-0.9
2,329,612	-				-0.9
2,329,706	+				-0.5
2,329,821	+		CA265_RS09385	0.13	-0.1
2,329,821	+		CA265_RS09385	0.13	-0.2
2,329,878	-		CA265_RS09385	0.26	-1.6
2,329,892	-		CA265_RS09385	0.29	-3.2
2,329,915	-		CA265_RS09385	0.34	-1.9
2,329,944	+		CA265_RS09385	0.40	-0.4
2,329,953	+		CA265_RS09385	0.42	-0.0
2,330,036	-		CA265_RS09385	0.61	-0.1
2,330,036	-		CA265_RS09385	0.61	-0.8
2,330,131	+		CA265_RS09385	0.82	-1.1
2,330,135	+		CA265_RS09385	0.83	-0.1
2,330,213	-				-0.8
2,330,225	+				-0.2
2,330,225	+				+1.0
2,330,226	-				-1.3
2,330,235	-				-2.9
2,330,245	+				-0.6
2,330,246	-				-0.2
2,330,251	-				-1.6
2,330,262	-				-1.7
2,330,285	+		CA265_RS09390	0.14	-0.2
2,330,347	-		CA265_RS09390	0.26	-1.1
2,330,351	+		CA265_RS09390	0.26	+0.3
2,330,381	+		CA265_RS09390	0.32	+0.3
2,330,423	+		CA265_RS09390	0.40	-0.1
2,330,425	+		CA265_RS09390	0.40	-0.3
2,330,425	+		CA265_RS09390	0.40	+0.2
2,330,425	+		CA265_RS09390	0.40	-0.5
2,330,426	-		CA265_RS09390	0.40	-1.7
2,330,426	-		CA265_RS09390	0.40	-1.9
2,330,426	-		CA265_RS09390	0.40	-1.0
2,330,467	+		CA265_RS09390	0.48	+0.4
2,330,468	-		CA265_RS09390	0.48	-0.8
2,330,514	+		CA265_RS09390	0.57	-0.7
2,330,565	+		CA265_RS09390	0.67	-0.2
2,330,566	-		CA265_RS09390	0.67	-0.3
2,330,644	-		CA265_RS09390	0.82	+1.2
2,330,658	+		CA265_RS09390	0.84	-0.9
2,330,659	-		CA265_RS09390	0.84	-0.6
2,330,735	+				+0.0
2,330,899	+		CA265_RS09395	0.21	+0.3
2,330,899	+		CA265_RS09395	0.21	-0.5
2,330,980	-		CA265_RS09395	0.38	-0.2
2,331,011	+		CA265_RS09395	0.45	-0.4
2,331,015	-		CA265_RS09395	0.46	-2.9
2,331,048	-		CA265_RS09395	0.53	-0.8
2,331,186	-		CA265_RS09395	0.82	-0.6