Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04990

Experiment: R2A with A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.02 mg/ml
1,185,464	-		CA265_RS04980	0.76	-0.9
1,185,488	-		CA265_RS04980	0.80	-0.4
1,185,543	-		CA265_RS04980	0.89	-1.8
1,185,642	-				+0.9
1,185,721	+		CA265_RS04985	0.15	-0.1
1,185,825	+		CA265_RS04985	0.29	+0.0
1,185,831	-		CA265_RS04985	0.30	+0.1
1,185,840	+		CA265_RS04985	0.31	+0.4
1,185,845	+		CA265_RS04985	0.31	+0.4
1,185,885	+		CA265_RS04985	0.37	-0.5
1,185,970	+		CA265_RS04985	0.48	+0.2
1,185,993	+		CA265_RS04985	0.51	+0.6
1,186,026	+		CA265_RS04985	0.56	+0.8
1,186,026	+		CA265_RS04985	0.56	-0.2
1,186,027	-		CA265_RS04985	0.56	+0.9
1,186,085	-		CA265_RS04985	0.64	+0.1
1,186,138	+		CA265_RS04985	0.71	+0.2
1,186,139	-		CA265_RS04985	0.71	-0.5
1,186,143	+		CA265_RS04985	0.72	+0.8
1,186,185	+		CA265_RS04985	0.78	-0.1
1,186,186	-		CA265_RS04985	0.78	-0.1
1,186,274	+		CA265_RS04985	0.90	-0.8
1,186,277	+				+1.3
1,186,277	+				+1.0
1,186,306	-				+0.6
1,186,348	+				-0.1
1,186,349	-				+0.0
1,186,349	-				+0.4
1,186,349	-				-0.1
1,186,352	-				-0.0
1,186,379	+				-0.3
1,186,379	+				-0.1
1,186,384	+				+0.7
1,186,387	+				-0.6
1,186,387	+				-0.3
1,186,388	-				-0.7
1,186,410	+				-1.5
1,186,658	-		CA265_RS04990	0.33	-3.0
1,186,658	-		CA265_RS04990	0.33	-0.9
1,186,696	-		CA265_RS04990	0.37	-2.9
1,186,701	+		CA265_RS04990	0.38	-3.3
1,186,793	-		CA265_RS04990	0.49	-3.4
1,186,806	+		CA265_RS04990	0.51	+1.0
1,186,926	+		CA265_RS04990	0.65	-3.0
1,187,068	+		CA265_RS04990	0.83	-1.6
1,187,087	-		CA265_RS04990	0.85	-2.3
1,187,091	+		CA265_RS04990	0.85	-2.3
1,187,091	+		CA265_RS04990	0.85	-0.2
1,187,199	+				+0.1
1,187,222	+				+0.1
1,187,239	+				+0.6
1,187,252	+				+0.0
1,187,297	-				-0.3
1,187,300	+				-0.3
1,187,351	-				+0.2
1,187,372	+				-0.2
1,187,373	-				+0.2
1,187,415	+		CA265_RS04995	0.14	-0.3
1,187,415	+				+2.4
1,187,415	+		CA265_RS04995	0.14	+1.7
1,187,416	-		CA265_RS04995	0.14	-0.1
1,187,557	+		CA265_RS04995	0.49	+1.2
1,187,594	-		CA265_RS04995	0.58	-0.2
1,187,823	-				-0.5
1,187,855	+				-0.3
1,187,867	-				-0.0
1,187,870	+				+0.5
1,187,871	-				+0.1
1,187,886	+				-1.1
1,187,887	-				-1.0
1,188,074	+		CA265_RS05000	0.25	+0.9
1,188,075	-		CA265_RS05000	0.25	-0.5
1,188,111	+		CA265_RS05000	0.29	+2.4
1,188,112	-		CA265_RS05000	0.29	+0.2
1,188,116	-		CA265_RS05000	0.30	-0.4
1,188,124	+		CA265_RS05000	0.31	-0.1
1,188,124	+		CA265_RS05000	0.31	-0.5
1,188,126	+		CA265_RS05000	0.31	+0.6
1,188,131	+		CA265_RS05000	0.31	+0.6