Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04650

Experiment: R2A with A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.02 mg/ml
1,110,820	+		CA265_RS04645	0.38	-0.2
1,110,821	-		CA265_RS04645	0.38	-0.8
1,110,879	+		CA265_RS04645	0.43	-1.6
1,110,900	-		CA265_RS04645	0.44	-1.3
1,110,900	-		CA265_RS04645	0.44	-4.1
1,110,954	-		CA265_RS04645	0.49	-0.1
1,110,976	-		CA265_RS04645	0.50	-1.1
1,110,981	-		CA265_RS04645	0.51	-1.0
1,111,106	+		CA265_RS04645	0.61	-2.3
1,111,151	-		CA265_RS04645	0.64	-1.4
1,111,177	+		CA265_RS04645	0.66	-0.9
1,111,177	+		CA265_RS04645	0.66	-0.8
1,111,178	-		CA265_RS04645	0.66	-0.3
1,111,184	+		CA265_RS04645	0.67	-0.8
1,111,212	+		CA265_RS04645	0.69	-0.2
1,111,234	+		CA265_RS04645	0.71	-1.4
1,111,253	+		CA265_RS04645	0.72	-0.5
1,111,254	-		CA265_RS04645	0.72	-1.0
1,111,339	+		CA265_RS04645	0.79	-0.9
1,111,346	-		CA265_RS04645	0.79	+0.1
1,111,382	-		CA265_RS04645	0.82	+0.1
1,111,412	+		CA265_RS04645	0.85	-0.6
1,111,483	+				-1.0
1,111,484	-				+0.4
1,111,517	+				-0.8
1,111,517	+				-0.5
1,111,531	-				-1.0
1,111,592	+				-0.2
1,111,592	+				-0.9
1,111,593	-				-0.3
1,111,593	-				-1.0
1,111,593	-				-1.2
1,111,597	-				+1.6
1,111,608	-				-1.7
1,111,775	-				+0.7
1,111,781	+				-0.5
1,111,781	+				-0.2
1,111,782	-				-1.2
1,111,785	+				+0.0
1,111,848	-				-0.8
1,111,885	+				-0.5
1,111,888	-				-1.7
1,111,976	-		CA265_RS04650	0.14	-1.3
1,111,994	-		CA265_RS04650	0.15	-0.8
1,112,040	-		CA265_RS04650	0.19	-0.2
1,112,081	-		CA265_RS04650	0.22	-1.3
1,112,083	+		CA265_RS04650	0.22	-0.5
1,112,099	+		CA265_RS04650	0.23	-0.6
1,112,103	-		CA265_RS04650	0.23	-0.6
1,112,105	+		CA265_RS04650	0.24	-1.3
1,112,151	+		CA265_RS04650	0.27	-0.4
1,112,155	+		CA265_RS04650	0.27	-0.6
1,112,323	+		CA265_RS04650	0.40	-0.7
1,112,350	+		CA265_RS04650	0.42	-0.9
1,112,350	+		CA265_RS04650	0.42	-1.0
1,112,351	-		CA265_RS04650	0.42	-1.4
1,112,351	-		CA265_RS04650	0.42	-1.0
1,112,369	+		CA265_RS04650	0.43	-1.4
1,112,481	-		CA265_RS04650	0.51	-0.4
1,112,521	+		CA265_RS04650	0.54	-1.0
1,112,522	-		CA265_RS04650	0.54	-2.5
1,112,689	+		CA265_RS04650	0.67	-0.5
1,112,736	-		CA265_RS04650	0.70	-0.9
1,112,764	-		CA265_RS04650	0.72	+0.1
1,112,775	-		CA265_RS04650	0.73	-1.1
1,112,833	+		CA265_RS04650	0.77	-0.9
1,112,932	+		CA265_RS04650	0.85	-1.0
1,113,005	-				-1.2
1,113,060	+				+0.1
1,113,068	-				-1.8
1,113,068	-				+0.5
1,113,068	-				+2.1
1,113,113	+				-0.9
1,113,120	-				-1.5
1,113,120	-				-0.5
1,113,131	+				-1.3
1,113,132	-				-3.3
1,113,152	+				-0.8
1,113,153	-				+1.0
1,113,160	-				-0.6
1,113,227	+		CA265_RS04655	0.13	-0.7
1,113,228	-		CA265_RS04655	0.13	-1.5
1,113,228	-		CA265_RS04655	0.13	-0.9
1,113,239	-		CA265_RS04655	0.15	-1.5
1,113,239	-		CA265_RS04655	0.15	-0.2
1,113,354	+		CA265_RS04655	0.32	-1.7
1,113,454	-		CA265_RS04655	0.46	-0.6
1,113,555	+		CA265_RS04655	0.61	-0.4
1,113,556	-		CA265_RS04655	0.62	-0.6
1,113,724	+		CA265_RS04655	0.86	-0.4
1,113,729	+		CA265_RS04655	0.87	-1.2
1,113,812	-				-0.8
1,113,812	-				-1.1
1,113,876	-				-0.4
1,113,876	-				-0.4
1,113,889	-				+0.1
1,113,890	+				-0.7
1,113,968	-				-0.2
1,113,968	-				-0.9
1,114,121	+		CA265_RS04660	0.14	-1.1
1,114,126	-		CA265_RS04660	0.14	-0.0