Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04645

Experiment: R2A with A22 0.02 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with A22 0.02 mg/ml
1,109,396	-		CA265_RS04640	0.14	+0.6
1,109,441	-		CA265_RS04640	0.18	-0.8
1,109,493	+		CA265_RS04640	0.23	+0.7
1,109,575	+		CA265_RS04640	0.31	-1.4
1,109,626	+		CA265_RS04640	0.35	-0.7
1,109,661	+		CA265_RS04640	0.38	-1.4
1,109,673	-		CA265_RS04640	0.40	+0.1
1,109,802	+		CA265_RS04640	0.51	+0.6
1,109,807	+		CA265_RS04640	0.52	-0.3
1,109,807	+		CA265_RS04640	0.52	-0.9
1,109,921	+		CA265_RS04640	0.62	-0.5
1,109,968	-		CA265_RS04640	0.67	-0.8
1,109,968	-		CA265_RS04640	0.67	-0.6
1,110,103	+		CA265_RS04640	0.79	+0.2
1,110,281	-				-0.6
1,110,365	-				-1.3
1,110,422	+				-1.3
1,110,443	-				-0.4
1,110,443	-				-0.8
1,110,592	-		CA265_RS04645	0.20	-1.0
1,110,607	-		CA265_RS04645	0.21	-1.4
1,110,645	+		CA265_RS04645	0.24	-0.4
1,110,646	-				-0.9
1,110,747	+		CA265_RS04645	0.32	+0.1
1,110,820	+		CA265_RS04645	0.38	-0.2
1,110,821	-		CA265_RS04645	0.38	-0.8
1,110,879	+		CA265_RS04645	0.43	-1.6
1,110,900	-		CA265_RS04645	0.44	-1.3
1,110,900	-		CA265_RS04645	0.44	-4.1
1,110,954	-		CA265_RS04645	0.49	-0.1
1,110,976	-		CA265_RS04645	0.50	-1.1
1,110,981	-		CA265_RS04645	0.51	-1.0
1,111,106	+		CA265_RS04645	0.61	-2.3
1,111,151	-		CA265_RS04645	0.64	-1.4
1,111,177	+		CA265_RS04645	0.66	-0.9
1,111,177	+		CA265_RS04645	0.66	-0.8
1,111,178	-		CA265_RS04645	0.66	-0.3
1,111,184	+		CA265_RS04645	0.67	-0.8
1,111,212	+		CA265_RS04645	0.69	-0.2
1,111,234	+		CA265_RS04645	0.71	-1.4
1,111,253	+		CA265_RS04645	0.72	-0.5
1,111,254	-		CA265_RS04645	0.72	-1.0
1,111,339	+		CA265_RS04645	0.79	-0.9
1,111,346	-		CA265_RS04645	0.79	+0.1
1,111,382	-		CA265_RS04645	0.82	+0.1
1,111,412	+		CA265_RS04645	0.85	-0.6
1,111,483	+				-1.0
1,111,484	-				+0.4
1,111,517	+				-0.8
1,111,517	+				-0.5
1,111,531	-				-1.0
1,111,592	+				-0.2
1,111,592	+				-0.9
1,111,593	-				-0.3
1,111,593	-				-1.0
1,111,593	-				-1.2
1,111,597	-				+1.6
1,111,608	-				-1.7
1,111,775	-				+0.7
1,111,781	+				-0.5
1,111,781	+				-0.2
1,111,782	-				-1.2
1,111,785	+				+0.0
1,111,848	-				-0.8
1,111,885	+				-0.5
1,111,888	-				-1.7
1,111,976	-		CA265_RS04650	0.14	-1.3
1,111,994	-		CA265_RS04650	0.15	-0.8
1,112,040	-		CA265_RS04650	0.19	-0.2
1,112,081	-		CA265_RS04650	0.22	-1.3
1,112,083	+		CA265_RS04650	0.22	-0.5
1,112,099	+		CA265_RS04650	0.23	-0.6
1,112,103	-		CA265_RS04650	0.23	-0.6
1,112,105	+		CA265_RS04650	0.24	-1.3
1,112,151	+		CA265_RS04650	0.27	-0.4
1,112,155	+		CA265_RS04650	0.27	-0.6
1,112,323	+		CA265_RS04650	0.40	-0.7
1,112,350	+		CA265_RS04650	0.42	-0.9
1,112,350	+		CA265_RS04650	0.42	-1.0
1,112,351	-		CA265_RS04650	0.42	-1.4
1,112,351	-		CA265_RS04650	0.42	-1.0
1,112,369	+		CA265_RS04650	0.43	-1.4
1,112,481	-		CA265_RS04650	0.51	-0.4
1,112,521	+		CA265_RS04650	0.54	-1.0
1,112,522	-		CA265_RS04650	0.54	-2.5