Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02625

Experiment: R2A with A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02620 and CA265_RS02625 are separated by 567 nucleotidesCA265_RS02625 and CA265_RS02630 are separated by 27 nucleotides CA265_RS02620: CA265_RS02620 - hypothetical protein, at 660,275 to 661,132 _RS02620 CA265_RS02625: CA265_RS02625 - rhamnose/proton symporter RhaT, at 661,700 to 662,794 _RS02625 CA265_RS02630: CA265_RS02630 - short-chain dehydrogenase, at 662,822 to 664,942 _RS02630 Position (kb) 661 662 663Strain fitness (log2 ratio) -2 -1 0 1 2at 660.735 kb on + strand, within CA265_RS02620at 660.760 kb on + strand, within CA265_RS02620at 660.760 kb on + strand, within CA265_RS02620at 660.860 kb on - strand, within CA265_RS02620at 660.910 kb on + strand, within CA265_RS02620at 660.927 kb on - strand, within CA265_RS02620at 661.019 kb on + strand, within CA265_RS02620at 661.019 kb on + strand, within CA265_RS02620at 661.020 kb on - strand, within CA265_RS02620at 661.020 kb on - strand, within CA265_RS02620at 661.062 kb on - strandat 661.063 kb on + strandat 661.064 kb on - strandat 661.064 kb on - strandat 661.096 kb on + strandat 661.130 kb on + strandat 661.130 kb on + strandat 661.130 kb on + strandat 661.131 kb on - strandat 661.163 kb on - strandat 661.212 kb on - strandat 661.340 kb on + strandat 661.389 kb on + strandat 661.438 kb on + strandat 661.456 kb on - strandat 661.472 kb on - strandat 661.479 kb on + strandat 661.497 kb on - strandat 661.536 kb on - strandat 661.537 kb on + strandat 661.544 kb on + strandat 661.551 kb on + strandat 661.591 kb on + strandat 661.592 kb on - strandat 661.599 kb on - strandat 661.661 kb on - strandat 661.802 kb on + strandat 661.886 kb on - strand, within CA265_RS02625at 661.886 kb on - strand, within CA265_RS02625at 661.906 kb on + strand, within CA265_RS02625at 661.907 kb on - strand, within CA265_RS02625at 661.912 kb on - strand, within CA265_RS02625at 661.957 kb on - strand, within CA265_RS02625at 662.002 kb on + strand, within CA265_RS02625at 662.006 kb on - strand, within CA265_RS02625at 662.051 kb on - strand, within CA265_RS02625at 662.055 kb on - strand, within CA265_RS02625at 662.055 kb on - strand, within CA265_RS02625at 662.086 kb on + strand, within CA265_RS02625at 662.108 kb on - strand, within CA265_RS02625at 662.143 kb on - strand, within CA265_RS02625at 662.182 kb on + strand, within CA265_RS02625at 662.250 kb on - strand, within CA265_RS02625at 662.283 kb on + strand, within CA265_RS02625at 662.351 kb on - strand, within CA265_RS02625at 662.421 kb on + strand, within CA265_RS02625at 662.422 kb on - strand, within CA265_RS02625at 662.422 kb on - strand, within CA265_RS02625at 662.456 kb on - strand, within CA265_RS02625at 662.465 kb on - strand, within CA265_RS02625at 662.472 kb on + strand, within CA265_RS02625at 662.504 kb on - strand, within CA265_RS02625at 662.558 kb on - strand, within CA265_RS02625at 662.591 kb on - strand, within CA265_RS02625at 662.647 kb on + strand, within CA265_RS02625at 662.668 kb on - strand, within CA265_RS02625at 662.682 kb on + strand, within CA265_RS02625at 662.720 kb on - strandat 662.740 kb on - strandat 662.796 kb on - strandat 662.796 kb on - strandat 662.810 kb on + strandat 662.810 kb on + strandat 662.817 kb on + strandat 662.853 kb on + strandat 662.859 kb on - strandat 662.919 kb on - strandat 662.946 kb on + strandat 662.961 kb on - strandat 662.984 kb on - strandat 663.057 kb on + strand, within CA265_RS02630at 663.066 kb on + strand, within CA265_RS02630at 663.092 kb on + strand, within CA265_RS02630at 663.092 kb on + strand, within CA265_RS02630at 663.092 kb on + strand, within CA265_RS02630at 663.093 kb on - strand, within CA265_RS02630at 663.126 kb on - strand, within CA265_RS02630at 663.245 kb on - strand, within CA265_RS02630at 663.318 kb on + strand, within CA265_RS02630at 663.343 kb on - strand, within CA265_RS02630at 663.421 kb on + strand, within CA265_RS02630at 663.421 kb on + strand, within CA265_RS02630at 663.421 kb on + strand, within CA265_RS02630at 663.421 kb on + strand, within CA265_RS02630at 663.422 kb on - strand, within CA265_RS02630at 663.457 kb on + strand, within CA265_RS02630at 663.481 kb on + strand, within CA265_RS02630at 663.487 kb on - strand, within CA265_RS02630at 663.528 kb on - strand, within CA265_RS02630at 663.533 kb on - strand, within CA265_RS02630at 663.589 kb on + strand, within CA265_RS02630at 663.641 kb on - strand, within CA265_RS02630

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with A22 0.02 mg/ml
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660,735 + CA265_RS02620 0.54 -0.3
660,760 + CA265_RS02620 0.57 +0.6
660,760 + CA265_RS02620 0.57 -0.3
660,860 - CA265_RS02620 0.68 -0.3
660,910 + CA265_RS02620 0.74 -0.1
660,927 - CA265_RS02620 0.76 +1.1
661,019 + CA265_RS02620 0.87 +0.2
661,019 + CA265_RS02620 0.87 +0.4
661,020 - CA265_RS02620 0.87 +0.3
661,020 - CA265_RS02620 0.87 -0.8
661,062 - -1.3
661,063 + +0.9
661,064 - +0.3
661,064 - +0.8
661,096 + -0.4
661,130 + -0.1
661,130 + +0.0
661,130 + +0.1
661,131 - -0.2
661,163 - +0.0
661,212 - +0.4
661,340 + +0.2
661,389 + +0.4
661,438 + +0.0
661,456 - +0.0
661,472 - -0.4
661,479 + +0.2
661,497 - -0.2
661,536 - -2.1
661,537 + -0.5
661,544 + -0.4
661,551 + -0.5
661,591 + +0.2
661,592 - -1.7
661,599 - -0.7
661,661 - -1.7
661,802 + -0.1
661,886 - CA265_RS02625 0.17 -0.9
661,886 - CA265_RS02625 0.17 -0.5
661,906 + CA265_RS02625 0.19 -0.7
661,907 - CA265_RS02625 0.19 +0.6
661,912 - CA265_RS02625 0.19 -0.8
661,957 - CA265_RS02625 0.23 -0.3
662,002 + CA265_RS02625 0.28 +0.3
662,006 - CA265_RS02625 0.28 -0.4
662,051 - CA265_RS02625 0.32 +0.0
662,055 - CA265_RS02625 0.32 -0.2
662,055 - CA265_RS02625 0.32 +0.3
662,086 + CA265_RS02625 0.35 -1.6
662,108 - CA265_RS02625 0.37 -0.2
662,143 - CA265_RS02625 0.40 -0.3
662,182 + CA265_RS02625 0.44 -0.1
662,250 - CA265_RS02625 0.50 -0.3
662,283 + CA265_RS02625 0.53 -1.4
662,351 - CA265_RS02625 0.59 -0.9
662,421 + CA265_RS02625 0.66 -0.8
662,422 - CA265_RS02625 0.66 +0.0
662,422 - CA265_RS02625 0.66 -0.2
662,456 - CA265_RS02625 0.69 -0.2
662,465 - CA265_RS02625 0.70 +0.5
662,472 + CA265_RS02625 0.71 -0.7
662,504 - CA265_RS02625 0.73 +0.1
662,558 - CA265_RS02625 0.78 +0.5
662,591 - CA265_RS02625 0.81 -0.4
662,647 + CA265_RS02625 0.86 -0.8
662,668 - CA265_RS02625 0.88 +0.0
662,682 + CA265_RS02625 0.90 +0.2
662,720 - -1.9
662,740 - +0.5
662,796 - -0.2
662,796 - +0.0
662,810 + -0.3
662,810 + -0.5
662,817 + -0.9
662,853 + +0.0
662,859 - +0.3
662,919 - -1.7
662,946 + +1.3
662,961 - -0.6
662,984 - +2.5
663,057 + CA265_RS02630 0.11 -0.6
663,066 + CA265_RS02630 0.12 -0.8
663,092 + CA265_RS02630 0.13 +0.9
663,092 + CA265_RS02630 0.13 +0.2
663,092 + CA265_RS02630 0.13 -0.0
663,093 - CA265_RS02630 0.13 -0.0
663,126 - CA265_RS02630 0.14 +0.2
663,245 - CA265_RS02630 0.20 +0.2
663,318 + CA265_RS02630 0.23 +0.5
663,343 - CA265_RS02630 0.25 -0.1
663,421 + CA265_RS02630 0.28 -1.1
663,421 + CA265_RS02630 0.28 -0.1
663,421 + CA265_RS02630 0.28 -0.2
663,421 + CA265_RS02630 0.28 +0.5
663,422 - CA265_RS02630 0.28 +0.8
663,457 + CA265_RS02630 0.30 -0.3
663,481 + CA265_RS02630 0.31 +0.3
663,487 - CA265_RS02630 0.31 +0.4
663,528 - CA265_RS02630 0.33 +0.3
663,533 - CA265_RS02630 0.34 +0.8
663,589 + CA265_RS02630 0.36 +0.6
663,641 - CA265_RS02630 0.39 -0.7

Or see this region's nucleotide sequence