Experiment: R2A with A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00260 and CA265_RS00265 are separated by 62 nucleotides CA265_RS00265 and CA265_RS00270 are separated by 9 nucleotides CA265_RS00270 and CA265_RS00275 overlap by 1 nucleotides
CA265_RS00260: CA265_RS00260 - hypothetical protein, at 61,604 to 62,698
_RS00260
CA265_RS00265: CA265_RS00265 - RNA polymerase sigma-70 factor, at 62,761 to 63,426
_RS00265
CA265_RS00270: CA265_RS00270 - hypothetical protein, at 63,436 to 64,395
_RS00270
CA265_RS00275: CA265_RS00275 - hypothetical protein, at 64,395 to 66,131
_RS00275
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1 at 62.489 kb on + strand, within CA265_RS00260 at 62.536 kb on + strand, within CA265_RS00260 at 62.649 kb on + strand at 62.672 kb on - strand at 62.672 kb on - strand at 62.702 kb on - strand at 62.810 kb on + strand at 62.819 kb on + strand at 62.821 kb on + strand at 62.821 kb on + strand at 62.821 kb on + strand at 62.822 kb on - strand at 63.035 kb on + strand, within CA265_RS00265 at 63.043 kb on - strand, within CA265_RS00265 at 63.044 kb on + strand, within CA265_RS00265 at 63.053 kb on - strand, within CA265_RS00265 at 63.079 kb on - strand, within CA265_RS00265 at 63.204 kb on - strand, within CA265_RS00265 at 63.300 kb on - strand, within CA265_RS00265 at 63.305 kb on + strand, within CA265_RS00265 at 63.404 kb on - strand at 63.406 kb on + strand at 63.569 kb on + strand, within CA265_RS00270 at 63.720 kb on + strand, within CA265_RS00270 at 64.162 kb on + strand, within CA265_RS00270 at 64.162 kb on + strand, within CA265_RS00270 at 64.408 kb on + strand at 64.418 kb on - strand at 64.442 kb on + strand at 64.458 kb on - strand at 64.506 kb on - strand at 64.571 kb on + strand, within CA265_RS00275 at 64.689 kb on + strand, within CA265_RS00275 at 64.691 kb on + strand, within CA265_RS00275 at 64.694 kb on + strand, within CA265_RS00275 at 64.700 kb on - strand, within CA265_RS00275 at 64.761 kb on + strand, within CA265_RS00275 at 64.762 kb on - strand, within CA265_RS00275 at 64.768 kb on + strand, within CA265_RS00275 at 64.768 kb on + strand, within CA265_RS00275 at 64.776 kb on + strand, within CA265_RS00275 at 64.802 kb on + strand, within CA265_RS00275 at 64.853 kb on + strand, within CA265_RS00275 at 64.879 kb on + strand, within CA265_RS00275 at 64.964 kb on + strand, within CA265_RS00275 at 64.965 kb on - strand, within CA265_RS00275 at 64.972 kb on + strand, within CA265_RS00275 at 64.972 kb on + strand, within CA265_RS00275 at 64.972 kb on + strand, within CA265_RS00275 at 64.973 kb on - strand, within CA265_RS00275 at 65.028 kb on - strand, within CA265_RS00275 at 65.162 kb on + strand, within CA265_RS00275 at 65.211 kb on + strand, within CA265_RS00275 at 65.273 kb on + strand, within CA265_RS00275 at 65.346 kb on + strand, within CA265_RS00275 at 65.347 kb on - strand, within CA265_RS00275 at 65.347 kb on - strand, within CA265_RS00275 at 65.356 kb on + strand, within CA265_RS00275 at 65.357 kb on - strand, within CA265_RS00275 at 65.357 kb on - strand, within CA265_RS00275 at 65.367 kb on - strand, within CA265_RS00275 at 65.377 kb on + strand, within CA265_RS00275 at 65.378 kb on - strand, within CA265_RS00275
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.02 mg/ml remove 62,489 + CA265_RS00260 0.81 +0.2 62,536 + CA265_RS00260 0.85 -0.5 62,649 + -0.0 62,672 - -0.1 62,672 - +0.3 62,702 - -0.2 62,810 + -1.6 62,819 + -0.6 62,821 + -0.8 62,821 + -0.4 62,821 + -0.2 62,822 - +0.0 63,035 + CA265_RS00265 0.41 -0.5 63,043 - CA265_RS00265 0.42 +0.2 63,044 + CA265_RS00265 0.42 +0.1 63,053 - CA265_RS00265 0.44 -0.2 63,079 - CA265_RS00265 0.48 +0.2 63,204 - CA265_RS00265 0.67 +0.4 63,300 - CA265_RS00265 0.81 +0.4 63,305 + CA265_RS00265 0.82 +0.3 63,404 - -1.5 63,406 + -0.1 63,569 + CA265_RS00270 0.14 -0.4 63,720 + CA265_RS00270 0.30 -0.8 64,162 + CA265_RS00270 0.76 -0.1 64,162 + CA265_RS00270 0.76 -1.8 64,408 + +0.3 64,418 - -0.1 64,442 + -1.3 64,458 - +0.3 64,506 - -0.2 64,571 + CA265_RS00275 0.10 -0.1 64,689 + CA265_RS00275 0.17 +1.3 64,691 + CA265_RS00275 0.17 +0.4 64,694 + CA265_RS00275 0.17 -1.3 64,700 - CA265_RS00275 0.18 +0.9 64,761 + CA265_RS00275 0.21 -0.3 64,762 - CA265_RS00275 0.21 +0.4 64,768 + CA265_RS00275 0.21 +0.3 64,768 + CA265_RS00275 0.21 -0.5 64,776 + CA265_RS00275 0.22 -0.4 64,802 + CA265_RS00275 0.23 -0.0 64,853 + CA265_RS00275 0.26 +1.3 64,879 + CA265_RS00275 0.28 +0.8 64,964 + CA265_RS00275 0.33 +0.5 64,965 - CA265_RS00275 0.33 +0.2 64,972 + CA265_RS00275 0.33 -0.1 64,972 + CA265_RS00275 0.33 +0.0 64,972 + CA265_RS00275 0.33 -1.4 64,973 - CA265_RS00275 0.33 -1.3 65,028 - CA265_RS00275 0.36 -1.3 65,162 + CA265_RS00275 0.44 +0.1 65,211 + CA265_RS00275 0.47 -0.9 65,273 + CA265_RS00275 0.51 -1.4 65,346 + CA265_RS00275 0.55 +0.2 65,347 - CA265_RS00275 0.55 -0.1 65,347 - CA265_RS00275 0.55 +0.5 65,356 + CA265_RS00275 0.55 +0.3 65,357 - CA265_RS00275 0.55 -1.4 65,357 - CA265_RS00275 0.55 -1.1 65,367 - CA265_RS00275 0.56 -0.2 65,377 + CA265_RS00275 0.57 -0.3 65,378 - CA265_RS00275 0.57 +0.1
Or see this region's nucleotide sequence