Experiment: R2A with A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00230 and CA265_RS00235 are separated by 150 nucleotides CA265_RS00235 and CA265_RS00240 are separated by 5 nucleotides
CA265_RS00230: CA265_RS00230 - hypothetical protein, at 56,398 to 57,468
_RS00230
CA265_RS00235: CA265_RS00235 - hypothetical protein, at 57,619 to 57,867
_RS00235
CA265_RS00240: CA265_RS00240 - histidine kinase, at 57,873 to 59,003
_RS00240
Position (kb) 57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 56.691 kb on - strand, within CA265_RS00230 at 56.829 kb on + strand, within CA265_RS00230 at 56.851 kb on + strand, within CA265_RS00230 at 56.854 kb on + strand, within CA265_RS00230 at 56.878 kb on + strand, within CA265_RS00230 at 56.879 kb on - strand, within CA265_RS00230 at 56.887 kb on - strand, within CA265_RS00230 at 56.917 kb on + strand, within CA265_RS00230 at 56.918 kb on - strand, within CA265_RS00230 at 56.962 kb on - strand, within CA265_RS00230 at 57.003 kb on + strand, within CA265_RS00230 at 57.003 kb on + strand, within CA265_RS00230 at 57.085 kb on + strand, within CA265_RS00230 at 57.085 kb on + strand, within CA265_RS00230 at 57.091 kb on - strand, within CA265_RS00230 at 57.171 kb on + strand, within CA265_RS00230 at 57.210 kb on + strand, within CA265_RS00230 at 57.253 kb on + strand, within CA265_RS00230 at 57.254 kb on - strand, within CA265_RS00230 at 57.316 kb on + strand, within CA265_RS00230 at 57.334 kb on + strand, within CA265_RS00230 at 57.601 kb on - strand at 57.619 kb on + strand at 57.633 kb on - strand at 57.663 kb on - strand, within CA265_RS00235 at 57.663 kb on - strand, within CA265_RS00235 at 57.787 kb on - strand, within CA265_RS00235 at 57.831 kb on - strand, within CA265_RS00235 at 57.848 kb on + strand at 57.993 kb on - strand, within CA265_RS00240 at 58.126 kb on - strand, within CA265_RS00240 at 58.126 kb on - strand, within CA265_RS00240 at 58.146 kb on + strand, within CA265_RS00240 at 58.190 kb on + strand, within CA265_RS00240 at 58.212 kb on - strand, within CA265_RS00240 at 58.367 kb on + strand, within CA265_RS00240 at 58.381 kb on + strand, within CA265_RS00240 at 58.390 kb on + strand, within CA265_RS00240 at 58.390 kb on + strand, within CA265_RS00240 at 58.562 kb on - strand, within CA265_RS00240 at 58.660 kb on + strand, within CA265_RS00240 at 58.689 kb on + strand, within CA265_RS00240 at 58.716 kb on + strand, within CA265_RS00240 at 58.716 kb on + strand, within CA265_RS00240 at 58.833 kb on - strand, within CA265_RS00240 at 58.855 kb on + strand, within CA265_RS00240
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with A22 0.02 mg/ml remove 56,691 - CA265_RS00230 0.27 +0.1 56,829 + CA265_RS00230 0.40 -0.0 56,851 + CA265_RS00230 0.42 +0.5 56,854 + CA265_RS00230 0.43 -0.9 56,878 + CA265_RS00230 0.45 +0.1 56,879 - CA265_RS00230 0.45 +0.5 56,887 - CA265_RS00230 0.46 -0.4 56,917 + CA265_RS00230 0.48 +0.4 56,918 - CA265_RS00230 0.49 +0.7 56,962 - CA265_RS00230 0.53 +0.1 57,003 + CA265_RS00230 0.56 -0.0 57,003 + CA265_RS00230 0.56 -0.0 57,085 + CA265_RS00230 0.64 -0.0 57,085 + CA265_RS00230 0.64 +1.1 57,091 - CA265_RS00230 0.65 +0.0 57,171 + CA265_RS00230 0.72 -0.6 57,210 + CA265_RS00230 0.76 -0.9 57,253 + CA265_RS00230 0.80 -0.4 57,254 - CA265_RS00230 0.80 -0.3 57,316 + CA265_RS00230 0.86 +0.4 57,334 + CA265_RS00230 0.87 -0.3 57,601 - -1.9 57,619 + +0.7 57,633 - +0.4 57,663 - CA265_RS00235 0.18 -0.1 57,663 - CA265_RS00235 0.18 -0.2 57,787 - CA265_RS00235 0.67 -1.0 57,831 - CA265_RS00235 0.85 -1.5 57,848 + -0.2 57,993 - CA265_RS00240 0.11 -2.1 58,126 - CA265_RS00240 0.22 -0.3 58,126 - CA265_RS00240 0.22 -0.1 58,146 + CA265_RS00240 0.24 +0.2 58,190 + CA265_RS00240 0.28 -0.4 58,212 - CA265_RS00240 0.30 -0.4 58,367 + CA265_RS00240 0.44 +0.6 58,381 + CA265_RS00240 0.45 +0.1 58,390 + CA265_RS00240 0.46 -0.8 58,390 + CA265_RS00240 0.46 +0.1 58,562 - CA265_RS00240 0.61 +1.2 58,660 + CA265_RS00240 0.70 -0.3 58,689 + CA265_RS00240 0.72 +0.8 58,716 + CA265_RS00240 0.75 -1.0 58,716 + CA265_RS00240 0.75 +0.8 58,833 - CA265_RS00240 0.85 -2.3 58,855 + CA265_RS00240 0.87 +0.7
Or see this region's nucleotide sequence