Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_887 and Ac3H11_888 are separated by 93 nucleotides Ac3H11_888 and Ac3H11_889 are separated by 26 nucleotides
Ac3H11_887 - putative exported protein, at 169,854 to 170,822
_887
Ac3H11_888 - hypothetical protein, at 170,916 to 171,173
_888
Ac3H11_889 - Salicylate hydroxylase (EC 1.14.13.1), at 171,200 to 172,846
_889
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.197 kb on + strand, within Ac3H11_887 at 170.198 kb on - strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.500 kb on + strand, within Ac3H11_887 at 170.501 kb on - strand, within Ac3H11_887 at 170.501 kb on - strand, within Ac3H11_887 at 170.572 kb on + strand, within Ac3H11_887 at 170.593 kb on + strand, within Ac3H11_887 at 170.716 kb on + strand, within Ac3H11_887 at 171.131 kb on - strand, within Ac3H11_888 at 171.131 kb on - strand, within Ac3H11_888 at 171.294 kb on + strand at 171.295 kb on - strand at 171.732 kb on + strand, within Ac3H11_889 at 171.733 kb on - strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.750 kb on + strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.751 kb on - strand, within Ac3H11_889 at 171.939 kb on + strand, within Ac3H11_889 at 171.939 kb on + strand, within Ac3H11_889 at 171.939 kb on + strand, within Ac3H11_889 at 171.940 kb on - strand, within Ac3H11_889 at 171.940 kb on - strand, within Ac3H11_889 at 171.940 kb on - strand, within Ac3H11_889
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 170,197 + Ac3H11_887 0.35 +0.3 170,198 - Ac3H11_887 0.36 -0.6 170,500 + Ac3H11_887 0.67 -0.8 170,500 + Ac3H11_887 0.67 -0.3 170,500 + Ac3H11_887 0.67 +0.4 170,501 - Ac3H11_887 0.67 -0.3 170,501 - Ac3H11_887 0.67 +1.8 170,572 + Ac3H11_887 0.74 +0.7 170,593 + Ac3H11_887 0.76 -0.9 170,716 + Ac3H11_887 0.89 +0.1 171,131 - Ac3H11_888 0.83 +0.5 171,131 - Ac3H11_888 0.83 -2.0 171,294 + -1.9 171,295 - +1.8 171,732 + Ac3H11_889 0.32 +0.0 171,733 - Ac3H11_889 0.32 -0.2 171,750 + Ac3H11_889 0.33 -0.5 171,750 + Ac3H11_889 0.33 +0.2 171,750 + Ac3H11_889 0.33 +0.8 171,750 + Ac3H11_889 0.33 -1.3 171,751 - Ac3H11_889 0.33 +0.0 171,751 - Ac3H11_889 0.33 +1.0 171,751 - Ac3H11_889 0.33 +1.3 171,751 - Ac3H11_889 0.33 -1.0 171,751 - Ac3H11_889 0.33 -0.4 171,751 - Ac3H11_889 0.33 +1.1 171,751 - Ac3H11_889 0.33 +0.5 171,939 + Ac3H11_889 0.45 +1.8 171,939 + Ac3H11_889 0.45 -2.3 171,939 + Ac3H11_889 0.45 +0.7 171,940 - Ac3H11_889 0.45 -0.2 171,940 - Ac3H11_889 0.45 +1.3 171,940 - Ac3H11_889 0.45 -0.2
Or see this region's nucleotide sequence