Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_697

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_695 and Ac3H11_696 overlap by 4 nucleotidesAc3H11_696 and Ac3H11_697 overlap by 4 nucleotidesAc3H11_697 and Ac3H11_698 are separated by 18 nucleotides Ac3H11_695 - Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1), at 52,097 to 53,164 _695 Ac3H11_696 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 53,161 to 54,024 _696 Ac3H11_697 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 54,021 to 54,971 _697 Ac3H11_698 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein, at 54,990 to 56,576 _698 Position (kb) 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 53.164 kb on + strandat 53.165 kb on - strandat 53.288 kb on + strand, within Ac3H11_696at 53.384 kb on + strand, within Ac3H11_696at 53.385 kb on - strand, within Ac3H11_696at 53.556 kb on - strand, within Ac3H11_696at 53.768 kb on + strand, within Ac3H11_696at 53.769 kb on - strand, within Ac3H11_696at 53.932 kb on + strand, within Ac3H11_696at 53.933 kb on - strand, within Ac3H11_696at 54.061 kb on + strandat 54.062 kb on - strandat 54.094 kb on + strandat 54.095 kb on - strandat 54.095 kb on - strandat 54.095 kb on - strandat 54.243 kb on + strand, within Ac3H11_697at 54.244 kb on - strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.338 kb on - strand, within Ac3H11_697at 54.338 kb on - strand, within Ac3H11_697at 54.338 kb on - strand, within Ac3H11_697at 54.338 kb on - strand, within Ac3H11_697at 54.472 kb on + strand, within Ac3H11_697at 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.992 kb on - strandat 54.992 kb on - strandat 54.992 kb on - strandat 55.039 kb on + strandat 55.040 kb on - strandat 55.040 kb on - strandat 55.285 kb on + strand, within Ac3H11_698at 55.285 kb on + strand, within Ac3H11_698at 55.286 kb on - strand, within Ac3H11_698at 55.286 kb on - strand, within Ac3H11_698at 55.405 kb on + strand, within Ac3H11_698at 55.405 kb on + strand, within Ac3H11_698at 55.406 kb on - strand, within Ac3H11_698at 55.456 kb on + strand, within Ac3H11_698at 55.507 kb on + strand, within Ac3H11_698at 55.507 kb on + strand, within Ac3H11_698at 55.507 kb on + strand, within Ac3H11_698at 55.507 kb on + strand, within Ac3H11_698at 55.531 kb on + strand, within Ac3H11_698at 55.531 kb on + strand, within Ac3H11_698at 55.532 kb on - strand, within Ac3H11_698at 55.532 kb on - strand, within Ac3H11_698at 55.532 kb on - strand, within Ac3H11_698at 55.534 kb on + strand, within Ac3H11_698at 55.534 kb on + strand, within Ac3H11_698at 55.534 kb on + strand, within Ac3H11_698at 55.534 kb on + strand, within Ac3H11_698at 55.535 kb on - strand, within Ac3H11_698at 55.690 kb on + strand, within Ac3H11_698at 55.690 kb on + strand, within Ac3H11_698at 55.690 kb on + strand, within Ac3H11_698at 55.691 kb on - strand, within Ac3H11_698at 55.691 kb on - strand, within Ac3H11_698at 55.770 kb on + strand, within Ac3H11_698at 55.783 kb on + strand, within Ac3H11_698at 55.784 kb on - strand, within Ac3H11_698at 55.969 kb on + strand, within Ac3H11_698at 55.969 kb on + strand, within Ac3H11_698

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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53,164 + -0.9
53,165 - +0.0
53,288 + Ac3H11_696 0.15 +0.6
53,384 + Ac3H11_696 0.26 -0.2
53,385 - Ac3H11_696 0.26 -0.1
53,556 - Ac3H11_696 0.46 +0.0
53,768 + Ac3H11_696 0.70 -0.7
53,769 - Ac3H11_696 0.70 +0.2
53,932 + Ac3H11_696 0.89 -0.4
53,933 - Ac3H11_696 0.89 -2.6
54,061 + -1.5
54,062 - +0.5
54,094 + +0.2
54,095 - +1.6
54,095 - -1.3
54,095 - -2.0
54,243 + Ac3H11_697 0.23 +0.7
54,244 - Ac3H11_697 0.23 -0.3
54,337 + Ac3H11_697 0.33 -0.4
54,337 + Ac3H11_697 0.33 +0.4
54,337 + Ac3H11_697 0.33 -1.0
54,337 + Ac3H11_697 0.33 +0.6
54,337 + Ac3H11_697 0.33 +0.6
54,338 - Ac3H11_697 0.33 +0.3
54,338 - Ac3H11_697 0.33 -3.3
54,338 - Ac3H11_697 0.33 +1.0
54,338 - Ac3H11_697 0.33 +0.9
54,472 + Ac3H11_697 0.47 -0.8
54,991 + -1.6
54,991 + +0.3
54,991 + +2.0
54,991 + -1.1
54,991 + +0.6
54,991 + +0.4
54,991 + -0.4
54,991 + -0.2
54,991 + +0.2
54,992 - +0.2
54,992 - +0.4
54,992 - +0.2
55,039 + +1.0
55,040 - +1.6
55,040 - +1.5
55,285 + Ac3H11_698 0.19 +1.5
55,285 + Ac3H11_698 0.19 +0.7
55,286 - Ac3H11_698 0.19 +1.8
55,286 - Ac3H11_698 0.19 -1.7
55,405 + Ac3H11_698 0.26 +0.6
55,405 + Ac3H11_698 0.26 -0.5
55,406 - Ac3H11_698 0.26 -0.6
55,456 + Ac3H11_698 0.29 +0.4
55,507 + Ac3H11_698 0.33 +0.1
55,507 + Ac3H11_698 0.33 -1.8
55,507 + Ac3H11_698 0.33 +0.5
55,507 + Ac3H11_698 0.33 -2.1
55,531 + Ac3H11_698 0.34 +0.2
55,531 + Ac3H11_698 0.34 +0.4
55,532 - Ac3H11_698 0.34 +0.4
55,532 - Ac3H11_698 0.34 +0.6
55,532 - Ac3H11_698 0.34 -0.2
55,534 + Ac3H11_698 0.34 -1.0
55,534 + Ac3H11_698 0.34 -1.3
55,534 + Ac3H11_698 0.34 -1.8
55,534 + Ac3H11_698 0.34 +0.0
55,535 - Ac3H11_698 0.34 +0.3
55,690 + Ac3H11_698 0.44 +1.1
55,690 + Ac3H11_698 0.44 -1.0
55,690 + Ac3H11_698 0.44 -0.7
55,691 - Ac3H11_698 0.44 +1.9
55,691 - Ac3H11_698 0.44 -0.5
55,770 + Ac3H11_698 0.49 +0.4
55,783 + Ac3H11_698 0.50 -2.5
55,784 - Ac3H11_698 0.50 +0.1
55,969 + Ac3H11_698 0.62 +0.0
55,969 + Ac3H11_698 0.62 +0.0

Or see this region's nucleotide sequence