Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_695

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_694 and Ac3H11_695 overlap by 4 nucleotidesAc3H11_695 and Ac3H11_696 overlap by 4 nucleotidesAc3H11_696 and Ac3H11_697 overlap by 4 nucleotides Ac3H11_694 - Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1), at 51,075 to 52,100 _694 Ac3H11_695 - Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1), at 52,097 to 53,164 _695 Ac3H11_696 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 53,161 to 54,024 _696 Ac3H11_697 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 54,021 to 54,971 _697 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.313 kb on + strand, within Ac3H11_694at 51.314 kb on - strand, within Ac3H11_694at 51.334 kb on + strand, within Ac3H11_694at 51.335 kb on - strand, within Ac3H11_694at 51.376 kb on + strand, within Ac3H11_694at 51.376 kb on + strand, within Ac3H11_694at 51.376 kb on + strand, within Ac3H11_694at 51.377 kb on - strand, within Ac3H11_694at 51.377 kb on - strand, within Ac3H11_694at 51.377 kb on - strand, within Ac3H11_694at 51.403 kb on + strand, within Ac3H11_694at 51.403 kb on + strand, within Ac3H11_694at 51.404 kb on - strand, within Ac3H11_694at 51.702 kb on - strand, within Ac3H11_694at 51.758 kb on - strand, within Ac3H11_694at 52.307 kb on + strand, within Ac3H11_695at 52.307 kb on + strand, within Ac3H11_695at 52.307 kb on + strand, within Ac3H11_695at 52.307 kb on + strand, within Ac3H11_695at 52.307 kb on + strand, within Ac3H11_695at 52.308 kb on - strand, within Ac3H11_695at 52.308 kb on - strand, within Ac3H11_695at 52.308 kb on - strand, within Ac3H11_695at 52.308 kb on - strand, within Ac3H11_695at 52.377 kb on + strand, within Ac3H11_695at 52.377 kb on + strand, within Ac3H11_695at 52.377 kb on + strand, within Ac3H11_695at 52.377 kb on + strand, within Ac3H11_695at 52.378 kb on - strand, within Ac3H11_695at 52.378 kb on - strand, within Ac3H11_695at 52.440 kb on + strand, within Ac3H11_695at 52.441 kb on - strand, within Ac3H11_695at 52.441 kb on - strand, within Ac3H11_695at 52.465 kb on - strand, within Ac3H11_695at 53.164 kb on + strandat 53.165 kb on - strandat 53.288 kb on + strand, within Ac3H11_696at 53.384 kb on + strand, within Ac3H11_696at 53.385 kb on - strand, within Ac3H11_696at 53.556 kb on - strand, within Ac3H11_696at 53.768 kb on + strand, within Ac3H11_696at 53.769 kb on - strand, within Ac3H11_696at 53.932 kb on + strand, within Ac3H11_696at 53.933 kb on - strand, within Ac3H11_696at 54.061 kb on + strandat 54.062 kb on - strandat 54.094 kb on + strandat 54.095 kb on - strandat 54.095 kb on - strandat 54.095 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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51,313 + Ac3H11_694 0.23 +1.5
51,314 - Ac3H11_694 0.23 +0.7
51,334 + Ac3H11_694 0.25 -1.5
51,335 - Ac3H11_694 0.25 +0.0
51,376 + Ac3H11_694 0.29 +1.1
51,376 + Ac3H11_694 0.29 -3.2
51,376 + Ac3H11_694 0.29 +0.6
51,377 - Ac3H11_694 0.29 -1.5
51,377 - Ac3H11_694 0.29 -0.5
51,377 - Ac3H11_694 0.29 +1.2
51,403 + Ac3H11_694 0.32 +1.3
51,403 + Ac3H11_694 0.32 -1.2
51,404 - Ac3H11_694 0.32 +0.6
51,702 - Ac3H11_694 0.61 -0.7
51,758 - Ac3H11_694 0.67 -0.5
52,307 + Ac3H11_695 0.20 +0.0
52,307 + Ac3H11_695 0.20 +2.5
52,307 + Ac3H11_695 0.20 -1.8
52,307 + Ac3H11_695 0.20 +0.1
52,307 + Ac3H11_695 0.20 -0.9
52,308 - Ac3H11_695 0.20 -1.0
52,308 - Ac3H11_695 0.20 +0.6
52,308 - Ac3H11_695 0.20 +0.2
52,308 - Ac3H11_695 0.20 +1.1
52,377 + Ac3H11_695 0.26 +1.0
52,377 + Ac3H11_695 0.26 -0.6
52,377 + Ac3H11_695 0.26 +0.8
52,377 + Ac3H11_695 0.26 -3.6
52,378 - Ac3H11_695 0.26 +0.8
52,378 - Ac3H11_695 0.26 -0.1
52,440 + Ac3H11_695 0.32 +2.9
52,441 - Ac3H11_695 0.32 -0.4
52,441 - Ac3H11_695 0.32 -0.0
52,465 - Ac3H11_695 0.34 -0.2
53,164 + -0.9
53,165 - +0.0
53,288 + Ac3H11_696 0.15 +0.6
53,384 + Ac3H11_696 0.26 -0.2
53,385 - Ac3H11_696 0.26 -0.1
53,556 - Ac3H11_696 0.46 +0.0
53,768 + Ac3H11_696 0.70 -0.7
53,769 - Ac3H11_696 0.70 +0.2
53,932 + Ac3H11_696 0.89 -0.4
53,933 - Ac3H11_696 0.89 -2.6
54,061 + -1.5
54,062 - +0.5
54,094 + +0.2
54,095 - +1.6
54,095 - -1.3
54,095 - -2.0

Or see this region's nucleotide sequence