Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_512

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_511 and Ac3H11_512 are separated by 325 nucleotidesAc3H11_512 and Ac3H11_513 are separated by 85 nucleotides Ac3H11_511 - FIG00933650: hypothetical protein, at 210,169 to 210,975 _511 Ac3H11_512 - Positive regulator of CheA protein activity (CheW), at 211,301 to 211,840 _512 Ac3H11_513 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 211,926 to 213,914 _513 Position (kb) 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.417 kb on + strand, within Ac3H11_511at 210.417 kb on + strand, within Ac3H11_511at 210.418 kb on - strand, within Ac3H11_511at 210.418 kb on - strand, within Ac3H11_511at 210.418 kb on - strand, within Ac3H11_511at 210.452 kb on + strand, within Ac3H11_511at 210.452 kb on + strand, within Ac3H11_511at 210.452 kb on + strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.453 kb on - strand, within Ac3H11_511at 210.497 kb on + strand, within Ac3H11_511at 210.543 kb on + strand, within Ac3H11_511at 210.602 kb on + strand, within Ac3H11_511at 210.602 kb on + strand, within Ac3H11_511at 210.602 kb on + strand, within Ac3H11_511at 210.602 kb on + strand, within Ac3H11_511at 210.603 kb on - strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.743 kb on + strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 210.744 kb on - strand, within Ac3H11_511at 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.071 kb on + strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.072 kb on - strandat 211.182 kb on - strandat 211.201 kb on + strandat 211.202 kb on - strandat 211.202 kb on - strandat 211.202 kb on - strandat 211.251 kb on + strandat 211.251 kb on + strandat 211.391 kb on + strand, within Ac3H11_512at 211.391 kb on + strand, within Ac3H11_512at 211.391 kb on + strand, within Ac3H11_512at 211.392 kb on - strand, within Ac3H11_512at 211.421 kb on + strand, within Ac3H11_512at 211.422 kb on - strand, within Ac3H11_512at 211.460 kb on + strand, within Ac3H11_512at 211.460 kb on + strand, within Ac3H11_512at 211.580 kb on + strand, within Ac3H11_512at 211.580 kb on + strand, within Ac3H11_512at 211.581 kb on - strand, within Ac3H11_512at 211.581 kb on - strand, within Ac3H11_512at 211.581 kb on - strand, within Ac3H11_512at 211.581 kb on - strand, within Ac3H11_512at 211.809 kb on + strandat 211.809 kb on + strandat 211.810 kb on - strandat 211.810 kb on - strandat 211.810 kb on - strandat 211.810 kb on - strandat 211.810 kb on - strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.838 kb on + strandat 211.839 kb on - strandat 211.839 kb on - strandat 211.839 kb on - strandat 212.313 kb on + strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.314 kb on - strand, within Ac3H11_513at 212.395 kb on - strand, within Ac3H11_513at 212.395 kb on - strand, within Ac3H11_513at 212.395 kb on - strand, within Ac3H11_513at 212.425 kb on - strand, within Ac3H11_513

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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210,417 + Ac3H11_511 0.31 +0.4
210,417 + Ac3H11_511 0.31 -2.7
210,418 - Ac3H11_511 0.31 +0.0
210,418 - Ac3H11_511 0.31 -0.3
210,418 - Ac3H11_511 0.31 -0.7
210,452 + Ac3H11_511 0.35 +0.3
210,452 + Ac3H11_511 0.35 -2.9
210,452 + Ac3H11_511 0.35 -0.5
210,453 - Ac3H11_511 0.35 -0.7
210,453 - Ac3H11_511 0.35 +1.3
210,453 - Ac3H11_511 0.35 +1.1
210,453 - Ac3H11_511 0.35 -0.5
210,453 - Ac3H11_511 0.35 -0.2
210,453 - Ac3H11_511 0.35 +0.8
210,453 - Ac3H11_511 0.35 -1.3
210,497 + Ac3H11_511 0.41 +0.4
210,543 + Ac3H11_511 0.46 -0.3
210,602 + Ac3H11_511 0.54 -1.4
210,602 + Ac3H11_511 0.54 +0.4
210,602 + Ac3H11_511 0.54 +1.6
210,602 + Ac3H11_511 0.54 -2.0
210,603 - Ac3H11_511 0.54 +0.1
210,743 + Ac3H11_511 0.71 +0.2
210,743 + Ac3H11_511 0.71 -2.5
210,743 + Ac3H11_511 0.71 -0.7
210,743 + Ac3H11_511 0.71 +2.5
210,743 + Ac3H11_511 0.71 -0.5
210,744 - Ac3H11_511 0.71 +1.5
210,744 - Ac3H11_511 0.71 +0.9
210,744 - Ac3H11_511 0.71 -2.4
210,744 - Ac3H11_511 0.71 -0.7
210,744 - Ac3H11_511 0.71 -0.1
210,744 - Ac3H11_511 0.71 -1.5
211,071 + -0.1
211,071 + +0.1
211,071 + -2.0
211,071 + +0.2
211,071 + -3.5
211,071 + -0.2
211,071 + +1.1
211,071 + -0.2
211,072 - +2.3
211,072 - -0.9
211,072 - -0.9
211,072 - +0.1
211,072 - -0.0
211,072 - -0.5
211,072 - -0.8
211,072 - +1.3
211,072 - -0.7
211,072 - -0.0
211,182 - -0.6
211,201 + -0.0
211,202 - -0.9
211,202 - +1.5
211,202 - -1.9
211,251 + -0.7
211,251 + +0.5
211,391 + Ac3H11_512 0.17 -0.2
211,391 + Ac3H11_512 0.17 +0.5
211,391 + Ac3H11_512 0.17 +1.6
211,392 - Ac3H11_512 0.17 -0.7
211,421 + Ac3H11_512 0.22 -2.0
211,422 - Ac3H11_512 0.22 -1.1
211,460 + Ac3H11_512 0.29 -1.5
211,460 + Ac3H11_512 0.29 +0.1
211,580 + Ac3H11_512 0.52 -0.5
211,580 + Ac3H11_512 0.52 -0.1
211,581 - Ac3H11_512 0.52 -1.0
211,581 - Ac3H11_512 0.52 -2.0
211,581 - Ac3H11_512 0.52 +0.7
211,581 - Ac3H11_512 0.52 +0.0
211,809 + -0.0
211,809 + -0.4
211,810 - -0.8
211,810 - -2.2
211,810 - -2.4
211,810 - +0.3
211,810 - -0.4
211,838 + +1.5
211,838 + +0.5
211,838 + -0.5
211,838 + +1.0
211,838 + +0.6
211,838 + +0.1
211,839 - -0.9
211,839 - +1.0
211,839 - -1.7
212,313 + Ac3H11_513 0.19 +0.7
212,314 - Ac3H11_513 0.20 +0.9
212,314 - Ac3H11_513 0.20 -1.2
212,314 - Ac3H11_513 0.20 +0.1
212,314 - Ac3H11_513 0.20 -1.7
212,314 - Ac3H11_513 0.20 +0.1
212,395 - Ac3H11_513 0.24 -3.4
212,395 - Ac3H11_513 0.24 +0.7
212,395 - Ac3H11_513 0.24 -0.9
212,425 - Ac3H11_513 0.25 +1.0

Or see this region's nucleotide sequence