Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4657 and Ac3H11_4658 are separated by 193 nucleotides Ac3H11_4658 and Ac3H11_4659 are separated by 128 nucleotides
Ac3H11_4657 - Enoyl-CoA hydratase (EC 4.2.1.17), at 263,382 to 264,200
_4657
Ac3H11_4658 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157), at 264,394 to 265,242
_4658
Ac3H11_4659 - Choline dehydrogenase (EC 1.1.99.1), at 265,371 to 266,960
_4659
Position (kb) 264
265
266 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 263.903 kb on - strand, within Ac3H11_4657 at 263.956 kb on + strand, within Ac3H11_4657 at 264.055 kb on + strand, within Ac3H11_4657 at 264.055 kb on + strand, within Ac3H11_4657 at 264.055 kb on + strand, within Ac3H11_4657 at 264.055 kb on + strand, within Ac3H11_4657 at 264.056 kb on - strand, within Ac3H11_4657 at 264.056 kb on - strand, within Ac3H11_4657 at 264.056 kb on - strand, within Ac3H11_4657 at 264.119 kb on + strand at 264.236 kb on + strand at 264.283 kb on + strand at 264.283 kb on + strand at 264.283 kb on + strand at 264.283 kb on + strand at 264.398 kb on + strand at 264.398 kb on + strand at 264.398 kb on + strand at 264.398 kb on + strand at 264.398 kb on + strand at 264.398 kb on + strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.399 kb on - strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.402 kb on + strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.403 kb on - strand at 264.404 kb on + strand at 264.404 kb on + strand at 264.404 kb on + strand at 264.404 kb on + strand at 264.404 kb on + strand at 264.404 kb on + strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.405 kb on - strand at 264.477 kb on - strand at 264.503 kb on + strand, within Ac3H11_4658 at 264.503 kb on + strand, within Ac3H11_4658 at 264.503 kb on + strand, within Ac3H11_4658 at 264.503 kb on + strand, within Ac3H11_4658 at 264.504 kb on - strand, within Ac3H11_4658 at 264.504 kb on - strand, within Ac3H11_4658 at 264.504 kb on - strand, within Ac3H11_4658 at 264.504 kb on - strand, within Ac3H11_4658 at 264.504 kb on - strand, within Ac3H11_4658 at 264.504 kb on - strand, within Ac3H11_4658 at 264.504 kb on - strand, within Ac3H11_4658 at 264.504 kb on - strand, within Ac3H11_4658 at 264.962 kb on + strand, within Ac3H11_4658 at 264.962 kb on + strand, within Ac3H11_4658 at 264.962 kb on + strand, within Ac3H11_4658 at 265.143 kb on + strand, within Ac3H11_4658 at 265.143 kb on + strand, within Ac3H11_4658 at 265.143 kb on + strand, within Ac3H11_4658 at 265.144 kb on - strand, within Ac3H11_4658 at 265.144 kb on - strand, within Ac3H11_4658 at 265.144 kb on - strand, within Ac3H11_4658 at 265.144 kb on - strand, within Ac3H11_4658 at 265.226 kb on - strand at 265.226 kb on - strand at 265.242 kb on + strand at 265.242 kb on + strand at 265.244 kb on + strand at 265.244 kb on + strand at 265.244 kb on + strand at 265.244 kb on + strand at 265.244 kb on + strand at 265.244 kb on + strand at 265.244 kb on + strand at 265.244 kb on + strand at 265.245 kb on - strand at 265.245 kb on - strand at 265.245 kb on - strand at 265.245 kb on - strand at 265.245 kb on - strand at 265.245 kb on - strand at 265.245 kb on - strand at 265.245 kb on - strand at 265.245 kb on - strand at 265.284 kb on + strand at 265.285 kb on - strand at 265.285 kb on - strand at 265.380 kb on + strand at 265.380 kb on + strand at 265.380 kb on + strand at 265.381 kb on - strand at 265.381 kb on - strand at 265.381 kb on - strand at 265.381 kb on - strand at 265.381 kb on - strand at 265.647 kb on + strand, within Ac3H11_4659 at 265.647 kb on + strand, within Ac3H11_4659 at 265.647 kb on + strand, within Ac3H11_4659 at 265.648 kb on - strand, within Ac3H11_4659 at 265.648 kb on - strand, within Ac3H11_4659 at 265.648 kb on - strand, within Ac3H11_4659 at 265.648 kb on - strand, within Ac3H11_4659 at 265.671 kb on + strand, within Ac3H11_4659 at 265.671 kb on + strand, within Ac3H11_4659 at 265.728 kb on + strand, within Ac3H11_4659 at 265.729 kb on - strand, within Ac3H11_4659 at 265.914 kb on + strand, within Ac3H11_4659 at 265.914 kb on + strand, within Ac3H11_4659 at 265.915 kb on - strand, within Ac3H11_4659 at 265.962 kb on + strand, within Ac3H11_4659 at 265.962 kb on + strand, within Ac3H11_4659 at 265.962 kb on + strand, within Ac3H11_4659 at 265.963 kb on - strand, within Ac3H11_4659 at 265.963 kb on - strand, within Ac3H11_4659 at 265.963 kb on - strand, within Ac3H11_4659 at 266.061 kb on + strand, within Ac3H11_4659 at 266.061 kb on + strand, within Ac3H11_4659 at 266.061 kb on + strand, within Ac3H11_4659
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 263,903 - Ac3H11_4657 0.64 -0.6 263,956 + Ac3H11_4657 0.70 +1.1 264,055 + Ac3H11_4657 0.82 -0.1 264,055 + Ac3H11_4657 0.82 +0.4 264,055 + Ac3H11_4657 0.82 -0.4 264,055 + Ac3H11_4657 0.82 -1.9 264,056 - Ac3H11_4657 0.82 -3.3 264,056 - Ac3H11_4657 0.82 -1.3 264,056 - Ac3H11_4657 0.82 +0.6 264,119 + +1.2 264,236 + -1.0 264,283 + -2.4 264,283 + +0.3 264,283 + +0.8 264,283 + +0.9 264,398 + -3.5 264,398 + -2.6 264,398 + -2.7 264,398 + +0.7 264,398 + -0.9 264,398 + -1.4 264,399 - -0.9 264,399 - +0.7 264,399 - +1.0 264,399 - +0.5 264,399 - +0.6 264,399 - +0.4 264,399 - +1.2 264,399 - -2.9 264,399 - -1.9 264,399 - +1.1 264,399 - +0.2 264,399 - -0.2 264,399 - -0.4 264,399 - +0.6 264,399 - +0.3 264,399 - +0.3 264,399 - +0.6 264,402 + +0.6 264,402 + +2.4 264,402 + +1.0 264,402 + -0.8 264,402 + +0.7 264,402 + +0.4 264,402 + +1.2 264,402 + +1.2 264,402 + -0.5 264,402 + +1.7 264,402 + -1.4 264,402 + -2.0 264,402 + -0.4 264,402 + +1.1 264,402 + +0.0 264,402 + +0.6 264,402 + -0.8 264,402 + +0.7 264,402 + -1.0 264,402 + +0.8 264,402 + -0.7 264,402 + -0.5 264,402 + -0.8 264,402 + -0.6 264,402 + -1.7 264,402 + -2.3 264,402 + +0.9 264,403 - -0.6 264,403 - +1.1 264,403 - +0.3 264,403 - +0.3 264,403 - +1.4 264,403 - +0.7 264,403 - -0.5 264,403 - +1.6 264,403 - -0.1 264,403 - +0.7 264,403 - -1.1 264,403 - +1.0 264,403 - +0.7 264,403 - +0.7 264,403 - -0.4 264,403 - -1.9 264,403 - +1.3 264,403 - +0.3 264,403 - +1.6 264,403 - -0.1 264,403 - +0.0 264,403 - -3.2 264,404 + +1.2 264,404 + +0.1 264,404 + -0.4 264,404 + -3.2 264,404 + +0.1 264,404 + -0.4 264,405 - +0.3 264,405 - -1.0 264,405 - +0.3 264,405 - -2.3 264,405 - +0.1 264,405 - +0.8 264,405 - -1.2 264,405 - +0.4 264,405 - -0.3 264,405 - +1.4 264,477 - -0.4 264,503 + Ac3H11_4658 0.13 +1.3 264,503 + Ac3H11_4658 0.13 +1.1 264,503 + Ac3H11_4658 0.13 +0.3 264,503 + Ac3H11_4658 0.13 -0.8 264,504 - Ac3H11_4658 0.13 +0.6 264,504 - Ac3H11_4658 0.13 +0.7 264,504 - Ac3H11_4658 0.13 -3.4 264,504 - Ac3H11_4658 0.13 +1.8 264,504 - Ac3H11_4658 0.13 -0.5 264,504 - Ac3H11_4658 0.13 -2.3 264,504 - Ac3H11_4658 0.13 +0.2 264,504 - Ac3H11_4658 0.13 -3.9 264,962 + Ac3H11_4658 0.67 -0.1 264,962 + Ac3H11_4658 0.67 +1.5 264,962 + Ac3H11_4658 0.67 +0.6 265,143 + Ac3H11_4658 0.88 -0.7 265,143 + Ac3H11_4658 0.88 +0.8 265,143 + Ac3H11_4658 0.88 -0.2 265,144 - Ac3H11_4658 0.88 -0.3 265,144 - Ac3H11_4658 0.88 +0.3 265,144 - Ac3H11_4658 0.88 -1.7 265,144 - Ac3H11_4658 0.88 -0.1 265,226 - -0.6 265,226 - +1.3 265,242 + +1.5 265,242 + +0.0 265,244 + +0.6 265,244 + +0.6 265,244 + -0.8 265,244 + +1.5 265,244 + -1.2 265,244 + +0.2 265,244 + -0.6 265,244 + +1.1 265,245 - +0.1 265,245 - +1.1 265,245 - +0.0 265,245 - +0.4 265,245 - +0.6 265,245 - -1.5 265,245 - -0.9 265,245 - +1.0 265,245 - -0.1 265,284 + -0.4 265,285 - -2.6 265,285 - -0.2 265,380 + +0.4 265,380 + +0.8 265,380 + +0.3 265,381 - -0.6 265,381 - +1.5 265,381 - -0.3 265,381 - -0.6 265,381 - +0.6 265,647 + Ac3H11_4659 0.17 -0.7 265,647 + Ac3H11_4659 0.17 +0.0 265,647 + Ac3H11_4659 0.17 +1.3 265,648 - Ac3H11_4659 0.17 +1.6 265,648 - Ac3H11_4659 0.17 +1.3 265,648 - Ac3H11_4659 0.17 +1.2 265,648 - Ac3H11_4659 0.17 +0.3 265,671 + Ac3H11_4659 0.19 +0.1 265,671 + Ac3H11_4659 0.19 +0.3 265,728 + Ac3H11_4659 0.22 -0.1 265,729 - Ac3H11_4659 0.23 +0.3 265,914 + Ac3H11_4659 0.34 -0.1 265,914 + Ac3H11_4659 0.34 +1.4 265,915 - Ac3H11_4659 0.34 +0.8 265,962 + Ac3H11_4659 0.37 -1.7 265,962 + Ac3H11_4659 0.37 +2.3 265,962 + Ac3H11_4659 0.37 -2.6 265,963 - Ac3H11_4659 0.37 -1.9 265,963 - Ac3H11_4659 0.37 +0.1 265,963 - Ac3H11_4659 0.37 -0.3 266,061 + Ac3H11_4659 0.43 +0.1 266,061 + Ac3H11_4659 0.43 -1.1 266,061 + Ac3H11_4659 0.43 +0.3
Or see this region's nucleotide sequence