Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4379 and Ac3H11_4380 are separated by 465 nucleotides Ac3H11_4380 and Ac3H11_4381 are separated by 96 nucleotides Ac3H11_4381 and Ac3H11_4382 are separated by 45 nucleotides
Ac3H11_4379 - hypothetical protein, at 173,374 to 174,936
_4379
Ac3H11_4380 - Putative membrane protein, at 175,402 to 176,115
_4380
Ac3H11_4381 - hypothetical protein, at 176,212 to 176,787
_4381
Ac3H11_4382 - hypothetical protein, at 176,833 to 176,976
_4382
Position (kb) 175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 174.548 kb on + strand, within Ac3H11_4379 at 174.548 kb on + strand, within Ac3H11_4379 at 174.549 kb on - strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.608 kb on + strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.609 kb on - strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.710 kb on + strand, within Ac3H11_4379 at 174.711 kb on - strand, within Ac3H11_4379 at 174.711 kb on - strand, within Ac3H11_4379 at 174.711 kb on - strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.761 kb on + strand, within Ac3H11_4379 at 174.762 kb on - strand, within Ac3H11_4379 at 174.806 kb on + strand at 174.806 kb on + strand at 174.806 kb on + strand at 174.908 kb on + strand at 174.908 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.007 kb on + strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.008 kb on - strand at 175.014 kb on + strand at 175.015 kb on - strand at 175.015 kb on - strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.042 kb on + strand at 175.043 kb on - strand at 175.043 kb on - strand at 175.043 kb on - strand at 175.043 kb on - strand at 175.043 kb on - strand at 175.255 kb on + strand at 175.256 kb on - strand at 175.257 kb on + strand at 175.258 kb on - strand at 175.258 kb on - strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.259 kb on + strand at 175.260 kb on - strand at 175.260 kb on - strand at 175.260 kb on - strand at 175.282 kb on + strand at 175.282 kb on + strand at 175.282 kb on + strand at 175.282 kb on + strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.283 kb on - strand at 175.286 kb on + strand at 175.286 kb on + strand at 175.286 kb on + strand at 175.445 kb on + strand at 175.445 kb on + strand at 175.445 kb on + strand at 175.445 kb on + strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.446 kb on - strand at 175.538 kb on + strand, within Ac3H11_4380 at 175.538 kb on + strand, within Ac3H11_4380 at 175.539 kb on - strand, within Ac3H11_4380 at 175.539 kb on - strand, within Ac3H11_4380 at 175.539 kb on - strand, within Ac3H11_4380 at 175.539 kb on - strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.820 kb on + strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 175.821 kb on - strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.039 kb on + strand, within Ac3H11_4380 at 176.040 kb on - strand, within Ac3H11_4380 at 176.040 kb on - strand, within Ac3H11_4380 at 176.040 kb on - strand, within Ac3H11_4380 at 176.197 kb on + strand at 176.197 kb on + strand at 176.197 kb on + strand at 176.384 kb on + strand, within Ac3H11_4381 at 176.384 kb on + strand, within Ac3H11_4381 at 176.384 kb on + strand, within Ac3H11_4381 at 176.384 kb on + strand, within Ac3H11_4381 at 176.384 kb on + strand, within Ac3H11_4381 at 176.385 kb on - strand, within Ac3H11_4381 at 176.385 kb on - strand, within Ac3H11_4381 at 176.420 kb on + strand, within Ac3H11_4381 at 176.420 kb on + strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.421 kb on - strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.504 kb on + strand, within Ac3H11_4381 at 176.505 kb on - strand, within Ac3H11_4381 at 176.505 kb on - strand, within Ac3H11_4381 at 176.505 kb on - strand, within Ac3H11_4381 at 176.564 kb on + strand, within Ac3H11_4381 at 176.564 kb on + strand, within Ac3H11_4381 at 176.564 kb on + strand, within Ac3H11_4381 at 176.565 kb on - strand, within Ac3H11_4381 at 176.568 kb on - strand, within Ac3H11_4381 at 176.568 kb on - strand, within Ac3H11_4381 at 176.660 kb on + strand, within Ac3H11_4381 at 176.660 kb on + strand, within Ac3H11_4381 at 176.661 kb on - strand, within Ac3H11_4381 at 176.661 kb on - strand, within Ac3H11_4381 at 176.661 kb on - strand, within Ac3H11_4381 at 176.661 kb on - strand, within Ac3H11_4381 at 176.693 kb on + strand, within Ac3H11_4381 at 176.693 kb on + strand, within Ac3H11_4381 at 176.693 kb on + strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.694 kb on - strand, within Ac3H11_4381 at 176.744 kb on + strand at 176.744 kb on + strand at 176.814 kb on - strand at 176.901 kb on + strand, within Ac3H11_4382 at 176.974 kb on + strand at 176.974 kb on + strand at 176.974 kb on + strand at 176.974 kb on + strand at 176.975 kb on - strand at 177.060 kb on - strand at 177.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 174,548 + Ac3H11_4379 0.75 +0.5 174,548 + Ac3H11_4379 0.75 +0.3 174,549 - Ac3H11_4379 0.75 +0.3 174,608 + Ac3H11_4379 0.79 +1.2 174,608 + Ac3H11_4379 0.79 -0.2 174,608 + Ac3H11_4379 0.79 +2.5 174,608 + Ac3H11_4379 0.79 -0.6 174,608 + Ac3H11_4379 0.79 -0.5 174,609 - Ac3H11_4379 0.79 +1.3 174,609 - Ac3H11_4379 0.79 +1.2 174,609 - Ac3H11_4379 0.79 +1.8 174,609 - Ac3H11_4379 0.79 -0.7 174,609 - Ac3H11_4379 0.79 +0.8 174,710 + Ac3H11_4379 0.85 +1.1 174,710 + Ac3H11_4379 0.85 +0.6 174,710 + Ac3H11_4379 0.85 +0.8 174,710 + Ac3H11_4379 0.85 -0.3 174,710 + Ac3H11_4379 0.85 +1.1 174,711 - Ac3H11_4379 0.86 +1.2 174,711 - Ac3H11_4379 0.86 -0.8 174,711 - Ac3H11_4379 0.86 +0.5 174,761 + Ac3H11_4379 0.89 +0.4 174,761 + Ac3H11_4379 0.89 +1.0 174,761 + Ac3H11_4379 0.89 +0.7 174,761 + Ac3H11_4379 0.89 -1.9 174,761 + Ac3H11_4379 0.89 +0.4 174,762 - Ac3H11_4379 0.89 +1.3 174,806 + +0.8 174,806 + +1.1 174,806 + +0.1 174,908 + +0.3 174,908 + +0.8 175,007 + +0.5 175,007 + +1.7 175,007 + -0.2 175,007 + +0.3 175,007 + -0.0 175,007 + -0.4 175,008 - +1.6 175,008 - -1.1 175,008 - -0.8 175,008 - -0.5 175,008 - -0.6 175,008 - -0.6 175,008 - -0.7 175,014 + +0.2 175,015 - -0.7 175,015 - +0.4 175,042 + -0.4 175,042 + +0.1 175,042 + +1.0 175,042 + +0.9 175,042 + -0.1 175,042 + -0.4 175,042 + +0.1 175,042 + -1.1 175,042 + -0.8 175,042 + +0.0 175,042 + +0.2 175,042 + +0.5 175,042 + +0.5 175,043 - +0.2 175,043 - -0.5 175,043 - +0.3 175,043 - +0.7 175,043 - +1.4 175,255 + +0.4 175,256 - -1.6 175,257 + +0.5 175,258 - +3.3 175,258 - +1.0 175,259 + -2.9 175,259 + +1.6 175,259 + -0.1 175,259 + -0.0 175,259 + -1.6 175,259 + -0.1 175,259 + +1.8 175,259 + +0.5 175,260 - -0.0 175,260 - +0.3 175,260 - -1.0 175,282 + -1.9 175,282 + +2.4 175,282 + -2.7 175,282 + -0.9 175,283 - -0.1 175,283 - +0.1 175,283 - +1.0 175,283 - +0.4 175,283 - -1.8 175,283 - -1.2 175,286 + -0.3 175,286 + -0.1 175,286 + +0.9 175,445 + -1.4 175,445 + +0.9 175,445 + -0.1 175,445 + -0.7 175,446 - +0.6 175,446 - -0.9 175,446 - -0.3 175,446 - +0.1 175,446 - -2.6 175,446 - -1.4 175,446 - -1.3 175,538 + Ac3H11_4380 0.19 +0.2 175,538 + Ac3H11_4380 0.19 +1.2 175,539 - Ac3H11_4380 0.19 -1.9 175,539 - Ac3H11_4380 0.19 -1.3 175,539 - Ac3H11_4380 0.19 -3.5 175,539 - Ac3H11_4380 0.19 +0.7 175,820 + Ac3H11_4380 0.59 -1.4 175,820 + Ac3H11_4380 0.59 +0.9 175,820 + Ac3H11_4380 0.59 -0.5 175,820 + Ac3H11_4380 0.59 +0.7 175,820 + Ac3H11_4380 0.59 -0.4 175,820 + Ac3H11_4380 0.59 -0.9 175,820 + Ac3H11_4380 0.59 +0.8 175,820 + Ac3H11_4380 0.59 +1.1 175,820 + Ac3H11_4380 0.59 +0.5 175,820 + Ac3H11_4380 0.59 +1.1 175,821 - Ac3H11_4380 0.59 +0.6 175,821 - Ac3H11_4380 0.59 -0.9 175,821 - Ac3H11_4380 0.59 +0.0 175,821 - Ac3H11_4380 0.59 -2.0 175,821 - Ac3H11_4380 0.59 -2.1 175,821 - Ac3H11_4380 0.59 +0.3 175,821 - Ac3H11_4380 0.59 +0.2 175,821 - Ac3H11_4380 0.59 +0.4 175,821 - Ac3H11_4380 0.59 -0.1 176,039 + Ac3H11_4380 0.89 -2.7 176,039 + Ac3H11_4380 0.89 -2.0 176,039 + Ac3H11_4380 0.89 +1.9 176,039 + Ac3H11_4380 0.89 -0.8 176,039 + Ac3H11_4380 0.89 -2.1 176,039 + Ac3H11_4380 0.89 +0.3 176,039 + Ac3H11_4380 0.89 -1.3 176,040 - Ac3H11_4380 0.89 -0.3 176,040 - Ac3H11_4380 0.89 +1.5 176,040 - Ac3H11_4380 0.89 -1.3 176,197 + -0.7 176,197 + +1.7 176,197 + -2.4 176,384 + Ac3H11_4381 0.30 -1.8 176,384 + Ac3H11_4381 0.30 -1.5 176,384 + Ac3H11_4381 0.30 -0.9 176,384 + Ac3H11_4381 0.30 -0.1 176,384 + Ac3H11_4381 0.30 -1.7 176,385 - Ac3H11_4381 0.30 +1.0 176,385 - Ac3H11_4381 0.30 +2.1 176,420 + Ac3H11_4381 0.36 -0.0 176,420 + Ac3H11_4381 0.36 +0.3 176,421 - Ac3H11_4381 0.36 +1.1 176,421 - Ac3H11_4381 0.36 -1.6 176,421 - Ac3H11_4381 0.36 -0.3 176,421 - Ac3H11_4381 0.36 +0.0 176,421 - Ac3H11_4381 0.36 +0.5 176,421 - Ac3H11_4381 0.36 +1.6 176,421 - Ac3H11_4381 0.36 +0.6 176,421 - Ac3H11_4381 0.36 +0.9 176,504 + Ac3H11_4381 0.51 +0.9 176,504 + Ac3H11_4381 0.51 -1.4 176,504 + Ac3H11_4381 0.51 -0.3 176,504 + Ac3H11_4381 0.51 +0.0 176,504 + Ac3H11_4381 0.51 -1.6 176,505 - Ac3H11_4381 0.51 -0.8 176,505 - Ac3H11_4381 0.51 +0.9 176,505 - Ac3H11_4381 0.51 -0.2 176,564 + Ac3H11_4381 0.61 -2.2 176,564 + Ac3H11_4381 0.61 -0.6 176,564 + Ac3H11_4381 0.61 +0.4 176,565 - Ac3H11_4381 0.61 +0.7 176,568 - Ac3H11_4381 0.62 -0.9 176,568 - Ac3H11_4381 0.62 -1.1 176,660 + Ac3H11_4381 0.78 +1.9 176,660 + Ac3H11_4381 0.78 +0.4 176,661 - Ac3H11_4381 0.78 +1.7 176,661 - Ac3H11_4381 0.78 -0.2 176,661 - Ac3H11_4381 0.78 -1.4 176,661 - Ac3H11_4381 0.78 -0.3 176,693 + Ac3H11_4381 0.84 +2.5 176,693 + Ac3H11_4381 0.84 +1.2 176,693 + Ac3H11_4381 0.84 +0.8 176,694 - Ac3H11_4381 0.84 +2.9 176,694 - Ac3H11_4381 0.84 +0.2 176,694 - Ac3H11_4381 0.84 -0.4 176,694 - Ac3H11_4381 0.84 +1.3 176,694 - Ac3H11_4381 0.84 +1.0 176,744 + -0.7 176,744 + -0.8 176,814 - +2.9 176,901 + Ac3H11_4382 0.47 -1.3 176,974 + +1.4 176,974 + -2.4 176,974 + -0.8 176,974 + -0.1 176,975 - +0.2 177,060 - -0.3 177,060 - +2.3
Or see this region's nucleotide sequence