Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4173 and Ac3H11_4174 overlap by 47 nucleotides Ac3H11_4174 and Ac3H11_4175 are separated by 45 nucleotides Ac3H11_4175 and Ac3H11_4176 are separated by 60 nucleotides
Ac3H11_4173 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 428,240 to 429,580
_4173
Ac3H11_4174 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 429,534 to 430,364
_4174
Ac3H11_4175 - TRAP-type C4-dicarboxylate transport system, large permease component, at 430,410 to 431,675
_4175
Ac3H11_4176 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 431,736 to 432,758
_4176
Position (kb) 430
431
432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 429.655 kb on + strand, within Ac3H11_4174 at 429.656 kb on - strand, within Ac3H11_4174 at 429.685 kb on + strand, within Ac3H11_4174 at 429.894 kb on + strand, within Ac3H11_4174 at 429.895 kb on - strand, within Ac3H11_4174 at 429.912 kb on + strand, within Ac3H11_4174 at 429.936 kb on + strand, within Ac3H11_4174 at 429.936 kb on + strand, within Ac3H11_4174 at 430.491 kb on + strand at 430.491 kb on + strand at 430.491 kb on + strand at 430.491 kb on + strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175 at 430.687 kb on - strand, within Ac3H11_4175 at 430.794 kb on + strand, within Ac3H11_4175 at 430.794 kb on + strand, within Ac3H11_4175 at 430.827 kb on + strand, within Ac3H11_4175 at 430.827 kb on + strand, within Ac3H11_4175 at 430.828 kb on - strand, within Ac3H11_4175 at 430.878 kb on + strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.879 kb on - strand, within Ac3H11_4175 at 430.989 kb on + strand, within Ac3H11_4175 at 430.989 kb on + strand, within Ac3H11_4175 at 430.990 kb on - strand, within Ac3H11_4175 at 431.163 kb on + strand, within Ac3H11_4175 at 431.164 kb on - strand, within Ac3H11_4175 at 431.164 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.224 kb on - strand, within Ac3H11_4175 at 431.284 kb on - strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.454 kb on + strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.455 kb on - strand, within Ac3H11_4175 at 431.674 kb on - strand at 431.674 kb on - strand at 431.674 kb on - strand at 432.100 kb on - strand, within Ac3H11_4176 at 432.170 kb on - strand, within Ac3H11_4176 at 432.304 kb on - strand, within Ac3H11_4176 at 432.316 kb on - strand, within Ac3H11_4176
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 429,655 + Ac3H11_4174 0.15 -0.4 429,656 - Ac3H11_4174 0.15 +0.1 429,685 + Ac3H11_4174 0.18 +0.4 429,894 + Ac3H11_4174 0.43 +0.1 429,895 - Ac3H11_4174 0.43 -0.1 429,912 + Ac3H11_4174 0.45 +0.6 429,936 + Ac3H11_4174 0.48 -2.6 429,936 + Ac3H11_4174 0.48 +0.6 430,491 + -1.4 430,491 + -0.5 430,491 + +0.9 430,491 + +1.1 430,492 - +0.5 430,492 - -1.1 430,492 - +0.5 430,492 - +0.7 430,563 + Ac3H11_4175 0.12 -1.1 430,563 + Ac3H11_4175 0.12 -0.1 430,563 + Ac3H11_4175 0.12 -2.8 430,563 + Ac3H11_4175 0.12 -1.4 430,564 - Ac3H11_4175 0.12 +0.3 430,564 - Ac3H11_4175 0.12 +0.8 430,564 - Ac3H11_4175 0.12 -0.8 430,687 - Ac3H11_4175 0.22 -0.4 430,794 + Ac3H11_4175 0.30 +0.4 430,794 + Ac3H11_4175 0.30 -0.4 430,827 + Ac3H11_4175 0.33 -0.6 430,827 + Ac3H11_4175 0.33 +0.2 430,828 - Ac3H11_4175 0.33 -0.5 430,878 + Ac3H11_4175 0.37 +0.5 430,879 - Ac3H11_4175 0.37 -0.2 430,879 - Ac3H11_4175 0.37 +2.7 430,879 - Ac3H11_4175 0.37 +0.4 430,989 + Ac3H11_4175 0.46 -1.1 430,989 + Ac3H11_4175 0.46 +1.6 430,990 - Ac3H11_4175 0.46 -0.3 431,163 + Ac3H11_4175 0.59 -0.1 431,164 - Ac3H11_4175 0.60 -0.6 431,164 - Ac3H11_4175 0.60 +1.4 431,224 - Ac3H11_4175 0.64 +0.6 431,224 - Ac3H11_4175 0.64 +1.1 431,224 - Ac3H11_4175 0.64 -2.2 431,284 - Ac3H11_4175 0.69 -2.0 431,454 + Ac3H11_4175 0.82 -0.4 431,454 + Ac3H11_4175 0.82 +0.4 431,454 + Ac3H11_4175 0.82 -0.2 431,455 - Ac3H11_4175 0.83 +0.3 431,455 - Ac3H11_4175 0.83 +0.1 431,455 - Ac3H11_4175 0.83 -0.4 431,674 - +2.1 431,674 - -1.1 431,674 - -0.3 432,100 - Ac3H11_4176 0.36 +3.6 432,170 - Ac3H11_4176 0.42 +0.6 432,304 - Ac3H11_4176 0.56 +0.9 432,316 - Ac3H11_4176 0.57 +1.3
Or see this region's nucleotide sequence