Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4171 and Ac3H11_4172 overlap by 4 nucleotides Ac3H11_4172 and Ac3H11_4173 overlap by 10 nucleotides Ac3H11_4173 and Ac3H11_4174 overlap by 47 nucleotides Ac3H11_4174 and Ac3H11_4175 are separated by 45 nucleotides
Ac3H11_4171 - D-amino-acid oxidase (EC 1.4.3.3), at 426,841 to 427,956
_4171
Ac3H11_4172 - Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain, at 427,953 to 428,249
_4172
Ac3H11_4173 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 428,240 to 429,580
_4173
Ac3H11_4174 - TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter, at 429,534 to 430,364
_4174
Ac3H11_4175 - TRAP-type C4-dicarboxylate transport system, large permease component, at 430,410 to 431,675
_4175
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 427.537 kb on + strand, within Ac3H11_4171 at 427.538 kb on - strand, within Ac3H11_4171 at 427.538 kb on - strand, within Ac3H11_4171 at 427.699 kb on + strand, within Ac3H11_4171 at 427.700 kb on - strand, within Ac3H11_4171 at 428.010 kb on - strand, within Ac3H11_4172 at 428.030 kb on + strand, within Ac3H11_4172 at 428.030 kb on + strand, within Ac3H11_4172 at 428.030 kb on + strand, within Ac3H11_4172 at 428.030 kb on + strand, within Ac3H11_4172 at 428.031 kb on - strand, within Ac3H11_4172 at 428.031 kb on - strand, within Ac3H11_4172 at 428.031 kb on - strand, within Ac3H11_4172 at 428.880 kb on + strand, within Ac3H11_4173 at 428.880 kb on + strand, within Ac3H11_4173 at 428.880 kb on + strand, within Ac3H11_4173 at 428.884 kb on + strand, within Ac3H11_4173 at 428.884 kb on + strand, within Ac3H11_4173 at 428.884 kb on + strand, within Ac3H11_4173 at 428.884 kb on + strand, within Ac3H11_4173 at 428.885 kb on - strand, within Ac3H11_4173 at 428.907 kb on - strand, within Ac3H11_4173 at 428.976 kb on + strand, within Ac3H11_4173 at 429.359 kb on + strand, within Ac3H11_4173 at 429.360 kb on - strand, within Ac3H11_4173 at 429.655 kb on + strand, within Ac3H11_4174 at 429.656 kb on - strand, within Ac3H11_4174 at 429.685 kb on + strand, within Ac3H11_4174 at 429.894 kb on + strand, within Ac3H11_4174 at 429.895 kb on - strand, within Ac3H11_4174 at 429.912 kb on + strand, within Ac3H11_4174 at 429.936 kb on + strand, within Ac3H11_4174 at 429.936 kb on + strand, within Ac3H11_4174 at 430.491 kb on + strand at 430.491 kb on + strand at 430.491 kb on + strand at 430.491 kb on + strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.492 kb on - strand at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.563 kb on + strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175 at 430.564 kb on - strand, within Ac3H11_4175
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 427,537 + Ac3H11_4171 0.62 -1.3 427,538 - Ac3H11_4171 0.62 +0.6 427,538 - Ac3H11_4171 0.62 -0.8 427,699 + Ac3H11_4171 0.77 -0.0 427,700 - Ac3H11_4171 0.77 +0.7 428,010 - Ac3H11_4172 0.19 +1.0 428,030 + Ac3H11_4172 0.26 -0.9 428,030 + Ac3H11_4172 0.26 -0.1 428,030 + Ac3H11_4172 0.26 +0.4 428,030 + Ac3H11_4172 0.26 +0.1 428,031 - Ac3H11_4172 0.26 +0.1 428,031 - Ac3H11_4172 0.26 -0.0 428,031 - Ac3H11_4172 0.26 -0.1 428,880 + Ac3H11_4173 0.48 +1.8 428,880 + Ac3H11_4173 0.48 -0.6 428,880 + Ac3H11_4173 0.48 -2.6 428,884 + Ac3H11_4173 0.48 +1.1 428,884 + Ac3H11_4173 0.48 +1.4 428,884 + Ac3H11_4173 0.48 +1.2 428,884 + Ac3H11_4173 0.48 +0.1 428,885 - Ac3H11_4173 0.48 -0.6 428,907 - Ac3H11_4173 0.50 +1.4 428,976 + Ac3H11_4173 0.55 +0.9 429,359 + Ac3H11_4173 0.83 -0.4 429,360 - Ac3H11_4173 0.84 +2.1 429,655 + Ac3H11_4174 0.15 -0.4 429,656 - Ac3H11_4174 0.15 +0.1 429,685 + Ac3H11_4174 0.18 +0.4 429,894 + Ac3H11_4174 0.43 +0.1 429,895 - Ac3H11_4174 0.43 -0.1 429,912 + Ac3H11_4174 0.45 +0.6 429,936 + Ac3H11_4174 0.48 -2.6 429,936 + Ac3H11_4174 0.48 +0.6 430,491 + -1.4 430,491 + -0.5 430,491 + +0.9 430,491 + +1.1 430,492 - +0.5 430,492 - -1.1 430,492 - +0.5 430,492 - +0.7 430,563 + Ac3H11_4175 0.12 -1.1 430,563 + Ac3H11_4175 0.12 -0.1 430,563 + Ac3H11_4175 0.12 -2.8 430,563 + Ac3H11_4175 0.12 -1.4 430,564 - Ac3H11_4175 0.12 +0.3 430,564 - Ac3H11_4175 0.12 +0.8 430,564 - Ac3H11_4175 0.12 -0.8
Or see this region's nucleotide sequence