Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3779 and Ac3H11_3780 are separated by 2 nucleotides Ac3H11_3780 and Ac3H11_3781 are separated by 118 nucleotides Ac3H11_3781 and Ac3H11_3782 are separated by 4 nucleotides Ac3H11_3782 and Ac3H11_3783 are separated by 43 nucleotides
Ac3H11_3779 - Mu-like prophage FluMu protein gp29, at 27,056 to 28,627
_3779
Ac3H11_3780 - Phage (Mu-like) virion morphogenesis protein, at 28,630 to 29,907
_3780
Ac3H11_3781 - hypothetical protein, at 30,026 to 30,481
_3781
Ac3H11_3782 - hypothetical protein, at 30,486 to 30,686
_3782
Ac3H11_3783 - Phage protein, at 30,730 to 31,311
_3783
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.650 kb on + strand, within Ac3H11_3779 at 27.764 kb on + strand, within Ac3H11_3779 at 27.765 kb on - strand, within Ac3H11_3779 at 27.923 kb on + strand, within Ac3H11_3779 at 27.924 kb on - strand, within Ac3H11_3779 at 28.100 kb on + strand, within Ac3H11_3779 at 28.128 kb on - strand, within Ac3H11_3779 at 28.232 kb on + strand, within Ac3H11_3779 at 28.233 kb on - strand, within Ac3H11_3779 at 28.233 kb on - strand, within Ac3H11_3779 at 28.531 kb on - strand at 28.984 kb on + strand, within Ac3H11_3780 at 28.985 kb on - strand, within Ac3H11_3780 at 28.985 kb on - strand, within Ac3H11_3780 at 29.008 kb on + strand, within Ac3H11_3780 at 29.008 kb on + strand, within Ac3H11_3780 at 29.009 kb on - strand, within Ac3H11_3780 at 29.219 kb on - strand, within Ac3H11_3780 at 29.219 kb on - strand, within Ac3H11_3780 at 29.219 kb on - strand, within Ac3H11_3780 at 29.327 kb on + strand, within Ac3H11_3780 at 29.327 kb on + strand, within Ac3H11_3780 at 29.327 kb on + strand, within Ac3H11_3780 at 29.331 kb on + strand, within Ac3H11_3780 at 29.332 kb on - strand, within Ac3H11_3780 at 29.332 kb on - strand, within Ac3H11_3780 at 29.332 kb on - strand, within Ac3H11_3780 at 29.332 kb on - strand, within Ac3H11_3780 at 29.332 kb on - strand, within Ac3H11_3780 at 29.351 kb on - strand, within Ac3H11_3780 at 29.833 kb on + strand at 29.834 kb on - strand at 29.834 kb on - strand at 29.953 kb on + strand at 30.072 kb on - strand, within Ac3H11_3781 at 30.228 kb on - strand, within Ac3H11_3781 at 30.456 kb on + strand at 30.456 kb on + strand at 30.457 kb on - strand at 30.538 kb on - strand, within Ac3H11_3782 at 30.595 kb on - strand, within Ac3H11_3782 at 30.603 kb on + strand, within Ac3H11_3782 at 30.603 kb on + strand, within Ac3H11_3782 at 30.603 kb on + strand, within Ac3H11_3782 at 30.604 kb on - strand, within Ac3H11_3782 at 30.604 kb on - strand, within Ac3H11_3782 at 30.615 kb on + strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.616 kb on - strand, within Ac3H11_3782 at 30.679 kb on - strand at 30.742 kb on + strand at 30.857 kb on + strand, within Ac3H11_3783 at 30.858 kb on - strand, within Ac3H11_3783
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 27,650 + Ac3H11_3779 0.38 +0.6 27,764 + Ac3H11_3779 0.45 +0.3 27,765 - Ac3H11_3779 0.45 +0.6 27,923 + Ac3H11_3779 0.55 +0.5 27,924 - Ac3H11_3779 0.55 +2.2 28,100 + Ac3H11_3779 0.66 -2.1 28,128 - Ac3H11_3779 0.68 +0.6 28,232 + Ac3H11_3779 0.75 -0.2 28,233 - Ac3H11_3779 0.75 +0.1 28,233 - Ac3H11_3779 0.75 +0.1 28,531 - -2.3 28,984 + Ac3H11_3780 0.28 +0.5 28,985 - Ac3H11_3780 0.28 -0.0 28,985 - Ac3H11_3780 0.28 -0.1 29,008 + Ac3H11_3780 0.30 +0.7 29,008 + Ac3H11_3780 0.30 -2.7 29,009 - Ac3H11_3780 0.30 +1.1 29,219 - Ac3H11_3780 0.46 -0.9 29,219 - Ac3H11_3780 0.46 -0.7 29,219 - Ac3H11_3780 0.46 -1.2 29,327 + Ac3H11_3780 0.55 -1.5 29,327 + Ac3H11_3780 0.55 -1.6 29,327 + Ac3H11_3780 0.55 +1.4 29,331 + Ac3H11_3780 0.55 -0.8 29,332 - Ac3H11_3780 0.55 +0.8 29,332 - Ac3H11_3780 0.55 -1.8 29,332 - Ac3H11_3780 0.55 -1.4 29,332 - Ac3H11_3780 0.55 -0.4 29,332 - Ac3H11_3780 0.55 -1.5 29,351 - Ac3H11_3780 0.56 +0.4 29,833 + +1.5 29,834 - -2.7 29,834 - +1.1 29,953 + -1.3 30,072 - Ac3H11_3781 0.10 +0.8 30,228 - Ac3H11_3781 0.44 -3.3 30,456 + +1.1 30,456 + -0.2 30,457 - +1.2 30,538 - Ac3H11_3782 0.26 -0.9 30,595 - Ac3H11_3782 0.54 -0.6 30,603 + Ac3H11_3782 0.58 -1.9 30,603 + Ac3H11_3782 0.58 -1.6 30,603 + Ac3H11_3782 0.58 +0.3 30,604 - Ac3H11_3782 0.59 -0.0 30,604 - Ac3H11_3782 0.59 -0.4 30,615 + Ac3H11_3782 0.64 -3.5 30,616 - Ac3H11_3782 0.65 -0.6 30,616 - Ac3H11_3782 0.65 +0.9 30,616 - Ac3H11_3782 0.65 +0.1 30,616 - Ac3H11_3782 0.65 +0.0 30,616 - Ac3H11_3782 0.65 -0.9 30,616 - Ac3H11_3782 0.65 -1.1 30,679 - +1.3 30,742 + +1.2 30,857 + Ac3H11_3783 0.22 +0.7 30,858 - Ac3H11_3783 0.22 -0.7
Or see this region's nucleotide sequence