Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3764

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3763 and Ac3H11_3764 are separated by 21 nucleotidesAc3H11_3764 and Ac3H11_3765 are separated by 50 nucleotidesAc3H11_3765 and Ac3H11_3766 overlap by 4 nucleotidesAc3H11_3766 and Ac3H11_3767 are separated by 2 nucleotides Ac3H11_3763 - Phage transposase, at 15,162 to 16,940 _3763 Ac3H11_3764 - Phage protein, at 16,962 to 17,843 _3764 Ac3H11_3765 - Transcriptional regulator, IclR family, at 17,894 to 18,232 _3765 Ac3H11_3766 - hypothetical protein, at 18,229 to 18,477 _3766 Ac3H11_3767 - phage-related hypothetical protein, at 18,480 to 18,950 _3767 Position (kb) 16 17 18Strain fitness (log2 ratio) -2 -1 0 1 2at 16.276 kb on + strand, within Ac3H11_3763at 16.276 kb on + strand, within Ac3H11_3763at 16.276 kb on + strand, within Ac3H11_3763at 16.343 kb on + strand, within Ac3H11_3763at 16.433 kb on - strand, within Ac3H11_3763at 16.540 kb on + strand, within Ac3H11_3763at 16.541 kb on - strand, within Ac3H11_3763at 16.852 kb on + strandat 16.852 kb on + strandat 16.963 kb on + strandat 17.124 kb on + strand, within Ac3H11_3764at 17.246 kb on + strand, within Ac3H11_3764at 17.736 kb on + strand, within Ac3H11_3764at 17.736 kb on + strand, within Ac3H11_3764at 17.736 kb on + strand, within Ac3H11_3764at 17.736 kb on + strand, within Ac3H11_3764at 17.737 kb on - strand, within Ac3H11_3764at 17.737 kb on - strand, within Ac3H11_3764at 17.847 kb on + strandat 17.847 kb on + strandat 18.064 kb on + strand, within Ac3H11_3765at 18.190 kb on + strand, within Ac3H11_3765at 18.529 kb on + strand, within Ac3H11_3767at 18.601 kb on + strand, within Ac3H11_3767at 18.736 kb on + strand, within Ac3H11_3767at 18.736 kb on + strand, within Ac3H11_3767

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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16,276 + Ac3H11_3763 0.63 +1.8
16,276 + Ac3H11_3763 0.63 -0.5
16,276 + Ac3H11_3763 0.63 +1.7
16,343 + Ac3H11_3763 0.66 +0.1
16,433 - Ac3H11_3763 0.71 -1.7
16,540 + Ac3H11_3763 0.77 +1.6
16,541 - Ac3H11_3763 0.78 -0.7
16,852 + -0.5
16,852 + +0.0
16,963 + -1.4
17,124 + Ac3H11_3764 0.18 -1.2
17,246 + Ac3H11_3764 0.32 +1.0
17,736 + Ac3H11_3764 0.88 -1.1
17,736 + Ac3H11_3764 0.88 +0.2
17,736 + Ac3H11_3764 0.88 -1.6
17,736 + Ac3H11_3764 0.88 +0.5
17,737 - Ac3H11_3764 0.88 -2.1
17,737 - Ac3H11_3764 0.88 -2.2
17,847 + +0.5
17,847 + +0.7
18,064 + Ac3H11_3765 0.50 -1.7
18,190 + Ac3H11_3765 0.87 -2.5
18,529 + Ac3H11_3767 0.10 +0.0
18,601 + Ac3H11_3767 0.26 +0.5
18,736 + Ac3H11_3767 0.54 +0.9
18,736 + Ac3H11_3767 0.54 -1.6

Or see this region's nucleotide sequence