Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3759 and Ac3H11_3760 overlap by 13 nucleotides Ac3H11_3760 and Ac3H11_3761 overlap by 4 nucleotides Ac3H11_3761 and Ac3H11_3762 are separated by 3 nucleotides Ac3H11_3762 and Ac3H11_3763 overlap by 4 nucleotides
Ac3H11_3759 - hypothetical protein, at 12,918 to 13,538
_3759
Ac3H11_3760 - hypothetical protein, at 13,526 to 13,789
_3760
Ac3H11_3761 - hypothetical protein, at 13,786 to 13,968
_3761
Ac3H11_3762 - Eha, at 13,972 to 15,165
_3762
Ac3H11_3763 - Phage transposase, at 15,162 to 16,940
_3763
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 13.180 kb on + strand, within Ac3H11_3759 at 13.180 kb on + strand, within Ac3H11_3759 at 13.180 kb on + strand, within Ac3H11_3759 at 13.394 kb on - strand, within Ac3H11_3759 at 13.394 kb on - strand, within Ac3H11_3759 at 13.680 kb on + strand, within Ac3H11_3760 at 13.751 kb on + strand, within Ac3H11_3760 at 13.751 kb on + strand, within Ac3H11_3760 at 13.752 kb on - strand, within Ac3H11_3760 at 13.958 kb on + strand at 14.069 kb on + strand at 14.168 kb on + strand, within Ac3H11_3762 at 14.168 kb on + strand, within Ac3H11_3762 at 14.168 kb on + strand, within Ac3H11_3762 at 14.364 kb on + strand, within Ac3H11_3762 at 14.604 kb on - strand, within Ac3H11_3762 at 14.866 kb on + strand, within Ac3H11_3762 at 15.787 kb on + strand, within Ac3H11_3763 at 15.787 kb on + strand, within Ac3H11_3763
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 13,180 + Ac3H11_3759 0.42 -0.1 13,180 + Ac3H11_3759 0.42 -0.2 13,180 + Ac3H11_3759 0.42 -0.3 13,394 - Ac3H11_3759 0.77 -1.2 13,394 - Ac3H11_3759 0.77 -1.7 13,680 + Ac3H11_3760 0.58 +0.0 13,751 + Ac3H11_3760 0.85 -0.7 13,751 + Ac3H11_3760 0.85 -1.1 13,752 - Ac3H11_3760 0.86 -2.6 13,958 + -0.9 14,069 + +0.3 14,168 + Ac3H11_3762 0.16 +0.2 14,168 + Ac3H11_3762 0.16 +0.5 14,168 + Ac3H11_3762 0.16 -1.0 14,364 + Ac3H11_3762 0.33 +0.6 14,604 - Ac3H11_3762 0.53 +0.3 14,866 + Ac3H11_3762 0.75 -0.2 15,787 + Ac3H11_3763 0.35 -1.2 15,787 + Ac3H11_3763 0.35 +0.9
Or see this region's nucleotide sequence