Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3611 and Ac3H11_3612 are separated by 10 nucleotides Ac3H11_3612 and Ac3H11_3613 overlap by 4 nucleotides Ac3H11_3613 and Ac3H11_3614 overlap by 4 nucleotides Ac3H11_3614 and Ac3H11_3615 are separated by 30 nucleotides
Ac3H11_3611 - Monooxygenase, flavin-binding family, at 163,462 to 164,796
_3611
Ac3H11_3612 - Na(+) dependent transporter,Sodium Bile acid symporter family, at 164,807 to 165,742
_3612
Ac3H11_3613 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 165,739 to 166,749
_3613
Ac3H11_3614 - Permease of the drug/metabolite transporter (DMT) superfamily, at 166,746 to 167,663
_3614
Ac3H11_3615 - Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1), at 167,694 to 168,323
_3615
Position (kb) 165
166
167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 164.756 kb on - strand at 164.826 kb on + strand at 164.826 kb on + strand at 164.827 kb on - strand at 165.036 kb on + strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.037 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.432 kb on - strand, within Ac3H11_3612 at 165.525 kb on - strand, within Ac3H11_3612 at 165.901 kb on + strand, within Ac3H11_3613 at 165.902 kb on - strand, within Ac3H11_3613 at 166.024 kb on + strand, within Ac3H11_3613 at 166.189 kb on + strand, within Ac3H11_3613 at 166.953 kb on + strand, within Ac3H11_3614 at 166.953 kb on + strand, within Ac3H11_3614 at 167.277 kb on + strand, within Ac3H11_3614 at 167.278 kb on - strand, within Ac3H11_3614 at 167.419 kb on - strand, within Ac3H11_3614 at 167.440 kb on + strand, within Ac3H11_3614 at 167.448 kb on + strand, within Ac3H11_3614 at 167.542 kb on - strand, within Ac3H11_3614 at 167.661 kb on + strand at 167.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 164,756 - -4.0 164,826 + +0.2 164,826 + +2.1 164,827 - +2.2 165,036 + Ac3H11_3612 0.24 +0.1 165,037 - Ac3H11_3612 0.25 -0.5 165,037 - Ac3H11_3612 0.25 +1.0 165,037 - Ac3H11_3612 0.25 -1.2 165,432 - Ac3H11_3612 0.67 -0.5 165,432 - Ac3H11_3612 0.67 +0.2 165,432 - Ac3H11_3612 0.67 -0.3 165,432 - Ac3H11_3612 0.67 +0.3 165,525 - Ac3H11_3612 0.77 +0.8 165,901 + Ac3H11_3613 0.16 +0.0 165,902 - Ac3H11_3613 0.16 -0.1 166,024 + Ac3H11_3613 0.28 +0.3 166,189 + Ac3H11_3613 0.45 -1.3 166,953 + Ac3H11_3614 0.23 +0.4 166,953 + Ac3H11_3614 0.23 -1.7 167,277 + Ac3H11_3614 0.58 +0.9 167,278 - Ac3H11_3614 0.58 +1.1 167,419 - Ac3H11_3614 0.73 +1.1 167,440 + Ac3H11_3614 0.76 +0.5 167,448 + Ac3H11_3614 0.76 -0.4 167,542 - Ac3H11_3614 0.87 +0.8 167,661 + +1.2 167,720 - -2.1
Or see this region's nucleotide sequence