Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_340 and Ac3H11_341 are separated by 29 nucleotides Ac3H11_341 and Ac3H11_342 are separated by 90 nucleotides Ac3H11_342 and Ac3H11_343 are separated by 11 nucleotides Ac3H11_343 and Ac3H11_344 are separated by 88 nucleotides
Ac3H11_340 - 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34), at 16,444 to 18,510
_340
Ac3H11_341 - FIG00455124: hypothetical protein, at 18,540 to 18,980
_341
Ac3H11_342 - Osmolarity sensory histidine kinase EnvZ, at 19,071 to 20,594
_342
Ac3H11_343 - Two-component system response regulator OmpR, at 20,606 to 21,337
_343
Ac3H11_344 - hypothetical protein, at 21,426 to 21,599
_344
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.276 kb on - strand, within Ac3H11_340 at 18.280 kb on + strand, within Ac3H11_340 at 18.280 kb on + strand, within Ac3H11_340 at 18.281 kb on - strand, within Ac3H11_340 at 18.391 kb on + strand at 18.391 kb on + strand at 18.392 kb on - strand at 18.392 kb on - strand at 18.392 kb on - strand at 18.687 kb on + strand, within Ac3H11_341 at 18.688 kb on - strand, within Ac3H11_341 at 18.688 kb on - strand, within Ac3H11_341 at 18.688 kb on - strand, within Ac3H11_341 at 18.753 kb on + strand, within Ac3H11_341 at 18.753 kb on + strand, within Ac3H11_341 at 18.753 kb on + strand, within Ac3H11_341 at 18.753 kb on + strand, within Ac3H11_341 at 18.754 kb on - strand, within Ac3H11_341 at 18.754 kb on - strand, within Ac3H11_341 at 18.754 kb on - strand, within Ac3H11_341 at 18.950 kb on + strand at 18.950 kb on + strand at 18.951 kb on - strand at 18.951 kb on - strand at 18.951 kb on - strand at 19.072 kb on + strand at 19.072 kb on + strand at 19.073 kb on - strand at 19.073 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 20.591 kb on - strand at 21.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 18,276 - Ac3H11_340 0.89 -0.5 18,280 + Ac3H11_340 0.89 +1.5 18,280 + Ac3H11_340 0.89 -0.6 18,281 - Ac3H11_340 0.89 -0.7 18,391 + +0.1 18,391 + +0.7 18,392 - +1.0 18,392 - -0.1 18,392 - -1.0 18,687 + Ac3H11_341 0.33 -0.6 18,688 - Ac3H11_341 0.34 -3.3 18,688 - Ac3H11_341 0.34 -0.5 18,688 - Ac3H11_341 0.34 -1.7 18,753 + Ac3H11_341 0.48 -1.5 18,753 + Ac3H11_341 0.48 +0.1 18,753 + Ac3H11_341 0.48 +1.3 18,753 + Ac3H11_341 0.48 +0.3 18,754 - Ac3H11_341 0.49 -0.6 18,754 - Ac3H11_341 0.49 +0.5 18,754 - Ac3H11_341 0.49 -0.1 18,950 + -0.5 18,950 + +0.8 18,951 - -0.3 18,951 - +0.4 18,951 - +0.2 19,072 + +0.9 19,072 + +0.8 19,073 - +0.3 19,073 - +0.1 20,591 - -1.4 20,591 - +2.0 20,591 - +3.0 20,591 - +1.1 20,591 - -1.7 20,591 - +2.7 20,591 - +1.4 20,591 - +3.0 20,591 - +2.4 20,591 - -0.1 21,428 - -0.4
Or see this region's nucleotide sequence