Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2522

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2520 and Ac3H11_2521 are separated by 51 nucleotidesAc3H11_2521 and Ac3H11_2522 are separated by 372 nucleotidesAc3H11_2522 and Ac3H11_2523 are separated by 40 nucleotides Ac3H11_2520 - 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC), at 795,691 to 797,550 _2520 Ac3H11_2521 - hypothetical protein, at 797,602 to 798,024 _2521 Ac3H11_2522 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 798,397 to 799,572 _2522 Ac3H11_2523 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 799,613 to 801,712 _2523 Position (kb) 798 799 800Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 797.405 kb on + strandat 797.405 kb on + strandat 797.405 kb on + strandat 797.405 kb on + strandat 797.406 kb on - strandat 797.406 kb on - strandat 797.406 kb on - strandat 797.406 kb on - strandat 797.406 kb on - strandat 797.406 kb on - strandat 797.406 kb on - strandat 797.516 kb on + strandat 797.516 kb on + strandat 797.517 kb on - strandat 798.215 kb on + strandat 798.215 kb on + strandat 798.215 kb on + strandat 798.216 kb on - strandat 798.216 kb on - strandat 798.216 kb on - strandat 798.378 kb on + strandat 798.378 kb on + strandat 798.378 kb on + strandat 798.379 kb on - strandat 798.379 kb on - strandat 798.379 kb on - strandat 798.430 kb on - strandat 798.430 kb on - strandat 798.527 kb on + strand, within Ac3H11_2522at 798.602 kb on + strand, within Ac3H11_2522at 798.602 kb on + strand, within Ac3H11_2522at 798.603 kb on - strand, within Ac3H11_2522at 798.789 kb on - strand, within Ac3H11_2522at 798.789 kb on - strand, within Ac3H11_2522at 798.789 kb on - strand, within Ac3H11_2522at 798.891 kb on + strand, within Ac3H11_2522at 798.891 kb on + strand, within Ac3H11_2522at 798.892 kb on - strand, within Ac3H11_2522at 798.892 kb on - strand, within Ac3H11_2522at 798.892 kb on - strand, within Ac3H11_2522at 798.892 kb on - strand, within Ac3H11_2522at 799.067 kb on + strand, within Ac3H11_2522at 799.067 kb on + strand, within Ac3H11_2522at 799.067 kb on + strand, within Ac3H11_2522at 799.097 kb on + strand, within Ac3H11_2522at 799.097 kb on + strand, within Ac3H11_2522at 799.097 kb on + strand, within Ac3H11_2522at 799.098 kb on - strand, within Ac3H11_2522at 799.098 kb on - strand, within Ac3H11_2522at 799.140 kb on - strand, within Ac3H11_2522at 799.140 kb on - strand, within Ac3H11_2522at 799.140 kb on - strand, within Ac3H11_2522at 799.443 kb on + strand, within Ac3H11_2522at 799.456 kb on + strandat 799.457 kb on - strandat 799.592 kb on + strandat 799.592 kb on + strandat 799.592 kb on + strandat 799.610 kb on + strandat 799.610 kb on + strandat 799.611 kb on - strandat 799.611 kb on - strandat 799.614 kb on + strandat 799.614 kb on + strandat 799.615 kb on - strandat 799.615 kb on - strandat 799.615 kb on - strandat 799.615 kb on - strandat 799.615 kb on - strandat 799.615 kb on - strandat 799.749 kb on + strandat 799.749 kb on + strandat 799.749 kb on + strandat 799.750 kb on - strandat 799.797 kb on + strandat 799.797 kb on + strandat 799.797 kb on + strandat 799.798 kb on - strandat 799.798 kb on - strandat 799.798 kb on - strandat 799.798 kb on - strandat 799.798 kb on - strandat 799.798 kb on - strandat 799.999 kb on - strand, within Ac3H11_2523at 799.999 kb on - strand, within Ac3H11_2523at 800.070 kb on + strand, within Ac3H11_2523at 800.070 kb on + strand, within Ac3H11_2523at 800.071 kb on - strand, within Ac3H11_2523at 800.244 kb on + strand, within Ac3H11_2523at 800.244 kb on + strand, within Ac3H11_2523at 800.244 kb on + strand, within Ac3H11_2523at 800.244 kb on + strand, within Ac3H11_2523at 800.244 kb on + strand, within Ac3H11_2523at 800.245 kb on - strand, within Ac3H11_2523at 800.473 kb on + strand, within Ac3H11_2523at 800.473 kb on + strand, within Ac3H11_2523at 800.474 kb on - strand, within Ac3H11_2523at 800.474 kb on - strand, within Ac3H11_2523at 800.474 kb on - strand, within Ac3H11_2523at 800.474 kb on - strand, within Ac3H11_2523at 800.474 kb on - strand, within Ac3H11_2523at 800.474 kb on - strand, within Ac3H11_2523

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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797,405 + +2.5
797,405 + -0.1
797,405 + -0.1
797,405 + +0.2
797,406 - -0.3
797,406 - +0.3
797,406 - -1.7
797,406 - -0.5
797,406 - -2.1
797,406 - -2.4
797,406 - -0.0
797,516 + +0.4
797,516 + -2.2
797,517 - -0.1
798,215 + -0.2
798,215 + +1.5
798,215 + +0.6
798,216 - -1.5
798,216 - +0.1
798,216 - -0.5
798,378 + -1.6
798,378 + +0.4
798,378 + +1.0
798,379 - -0.3
798,379 - +0.7
798,379 - +0.9
798,430 - +0.2
798,430 - +0.2
798,527 + Ac3H11_2522 0.11 -0.9
798,602 + Ac3H11_2522 0.17 +1.3
798,602 + Ac3H11_2522 0.17 -0.4
798,603 - Ac3H11_2522 0.18 +0.0
798,789 - Ac3H11_2522 0.33 -2.4
798,789 - Ac3H11_2522 0.33 -0.9
798,789 - Ac3H11_2522 0.33 +0.0
798,891 + Ac3H11_2522 0.42 -0.9
798,891 + Ac3H11_2522 0.42 +0.6
798,892 - Ac3H11_2522 0.42 -1.2
798,892 - Ac3H11_2522 0.42 -0.3
798,892 - Ac3H11_2522 0.42 +0.7
798,892 - Ac3H11_2522 0.42 -0.1
799,067 + Ac3H11_2522 0.57 +0.4
799,067 + Ac3H11_2522 0.57 +0.7
799,067 + Ac3H11_2522 0.57 -1.5
799,097 + Ac3H11_2522 0.60 +1.4
799,097 + Ac3H11_2522 0.60 -0.6
799,097 + Ac3H11_2522 0.60 +1.1
799,098 - Ac3H11_2522 0.60 -2.4
799,098 - Ac3H11_2522 0.60 +1.0
799,140 - Ac3H11_2522 0.63 +0.9
799,140 - Ac3H11_2522 0.63 +0.1
799,140 - Ac3H11_2522 0.63 -2.0
799,443 + Ac3H11_2522 0.89 +0.9
799,456 + +0.8
799,457 - +0.6
799,592 + -3.1
799,592 + -0.7
799,592 + +0.8
799,610 + +0.2
799,610 + +1.8
799,611 - +0.9
799,611 - +0.5
799,614 + -2.2
799,614 + -0.6
799,615 - -0.0
799,615 - -1.5
799,615 - +0.7
799,615 - -0.7
799,615 - -3.6
799,615 - +1.4
799,749 + +0.4
799,749 + +0.9
799,749 + -1.3
799,750 - +2.2
799,797 + +0.0
799,797 + -0.1
799,797 + +0.1
799,798 - +0.3
799,798 - -0.9
799,798 - +0.1
799,798 - +1.1
799,798 - +0.9
799,798 - +0.3
799,999 - Ac3H11_2523 0.18 +1.1
799,999 - Ac3H11_2523 0.18 +0.8
800,070 + Ac3H11_2523 0.22 -1.1
800,070 + Ac3H11_2523 0.22 +1.6
800,071 - Ac3H11_2523 0.22 -0.1
800,244 + Ac3H11_2523 0.30 +0.7
800,244 + Ac3H11_2523 0.30 -1.2
800,244 + Ac3H11_2523 0.30 +0.4
800,244 + Ac3H11_2523 0.30 -2.3
800,244 + Ac3H11_2523 0.30 -1.0
800,245 - Ac3H11_2523 0.30 +0.7
800,473 + Ac3H11_2523 0.41 +0.2
800,473 + Ac3H11_2523 0.41 -2.0
800,474 - Ac3H11_2523 0.41 +0.4
800,474 - Ac3H11_2523 0.41 +1.2
800,474 - Ac3H11_2523 0.41 -0.1
800,474 - Ac3H11_2523 0.41 -2.9
800,474 - Ac3H11_2523 0.41 -0.3
800,474 - Ac3H11_2523 0.41 +0.4

Or see this region's nucleotide sequence