Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2224

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2223 and Ac3H11_2224 are separated by 7 nucleotidesAc3H11_2224 and Ac3H11_2225 are separated by 102 nucleotides Ac3H11_2223 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 459,298 to 460,476 _2223 Ac3H11_2224 - Transcriptional regulator, TetR family, at 460,484 to 461,182 _2224 Ac3H11_2225 - Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11), at 461,285 to 461,821 _2225 Position (kb) 460 461 462Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 459.488 kb on + strand, within Ac3H11_2223at 459.488 kb on + strand, within Ac3H11_2223at 459.489 kb on - strand, within Ac3H11_2223at 459.521 kb on + strand, within Ac3H11_2223at 459.656 kb on + strand, within Ac3H11_2223at 459.656 kb on + strand, within Ac3H11_2223at 459.656 kb on + strand, within Ac3H11_2223at 459.657 kb on - strand, within Ac3H11_2223at 459.851 kb on - strand, within Ac3H11_2223at 459.851 kb on - strand, within Ac3H11_2223at 459.972 kb on - strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.029 kb on + strand, within Ac3H11_2223at 460.030 kb on - strand, within Ac3H11_2223at 460.030 kb on - strand, within Ac3H11_2223at 460.064 kb on + strand, within Ac3H11_2223at 460.064 kb on + strand, within Ac3H11_2223at 460.065 kb on - strand, within Ac3H11_2223at 460.065 kb on - strand, within Ac3H11_2223at 460.363 kb on - strandat 460.575 kb on + strand, within Ac3H11_2224at 460.575 kb on + strand, within Ac3H11_2224at 460.575 kb on + strand, within Ac3H11_2224at 460.575 kb on + strand, within Ac3H11_2224at 460.575 kb on + strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.576 kb on - strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.668 kb on + strand, within Ac3H11_2224at 460.669 kb on - strand, within Ac3H11_2224at 460.669 kb on - strand, within Ac3H11_2224at 460.669 kb on - strand, within Ac3H11_2224at 460.677 kb on + strand, within Ac3H11_2224at 460.677 kb on + strand, within Ac3H11_2224at 460.678 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.774 kb on - strand, within Ac3H11_2224at 460.872 kb on + strand, within Ac3H11_2224at 460.872 kb on + strand, within Ac3H11_2224at 460.872 kb on + strand, within Ac3H11_2224at 460.873 kb on - strand, within Ac3H11_2224at 460.873 kb on - strand, within Ac3H11_2224at 460.873 kb on - strand, within Ac3H11_2224at 460.873 kb on - strand, within Ac3H11_2224at 461.210 kb on - strandat 461.212 kb on + strandat 461.217 kb on + strandat 461.246 kb on + strandat 461.247 kb on - strandat 461.247 kb on - strandat 461.381 kb on + strand, within Ac3H11_2225at 461.411 kb on + strand, within Ac3H11_2225at 461.411 kb on + strand, within Ac3H11_2225at 461.411 kb on + strand, within Ac3H11_2225at 461.412 kb on - strand, within Ac3H11_2225at 461.412 kb on - strand, within Ac3H11_2225at 461.412 kb on - strand, within Ac3H11_2225at 461.582 kb on + strand, within Ac3H11_2225at 461.582 kb on + strand, within Ac3H11_2225at 461.582 kb on + strand, within Ac3H11_2225at 461.582 kb on + strand, within Ac3H11_2225at 461.582 kb on + strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.583 kb on - strand, within Ac3H11_2225at 461.585 kb on + strand, within Ac3H11_2225at 461.585 kb on + strand, within Ac3H11_2225at 461.585 kb on + strand, within Ac3H11_2225at 461.586 kb on - strand, within Ac3H11_2225at 461.586 kb on - strand, within Ac3H11_2225at 461.586 kb on - strand, within Ac3H11_2225at 461.611 kb on + strand, within Ac3H11_2225at 461.611 kb on + strand, within Ac3H11_2225at 461.612 kb on - strand, within Ac3H11_2225at 461.612 kb on - strand, within Ac3H11_2225at 461.693 kb on + strand, within Ac3H11_2225at 461.693 kb on + strand, within Ac3H11_2225at 461.693 kb on + strand, within Ac3H11_2225at 461.694 kb on - strand, within Ac3H11_2225at 461.694 kb on - strand, within Ac3H11_2225at 461.694 kb on - strand, within Ac3H11_2225at 461.694 kb on - strand, within Ac3H11_2225at 461.694 kb on - strand, within Ac3H11_2225at 461.694 kb on - strand, within Ac3H11_2225at 461.694 kb on - strand, within Ac3H11_2225at 461.711 kb on + strand, within Ac3H11_2225at 461.712 kb on - strand, within Ac3H11_2225at 461.712 kb on - strand, within Ac3H11_2225at 461.712 kb on - strand, within Ac3H11_2225at 461.723 kb on + strand, within Ac3H11_2225at 461.724 kb on - strand, within Ac3H11_2225at 461.724 kb on - strand, within Ac3H11_2225at 461.724 kb on - strand, within Ac3H11_2225at 461.724 kb on - strand, within Ac3H11_2225at 461.724 kb on - strand, within Ac3H11_2225at 461.751 kb on - strand, within Ac3H11_2225at 461.751 kb on - strand, within Ac3H11_2225at 461.808 kb on - strandat 461.811 kb on + strandat 461.811 kb on + strandat 461.812 kb on - strandat 461.812 kb on - strandat 461.832 kb on + strandat 461.832 kb on + strandat 461.833 kb on - strandat 461.838 kb on - strandat 461.870 kb on - strandat 461.874 kb on - strandat 461.953 kb on - strandat 462.034 kb on - strandat 462.040 kb on + strandat 462.131 kb on + strandat 462.132 kb on - strandat 462.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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459,488 + Ac3H11_2223 0.16 +0.6
459,488 + Ac3H11_2223 0.16 -0.6
459,489 - Ac3H11_2223 0.16 -2.5
459,521 + Ac3H11_2223 0.19 +0.3
459,656 + Ac3H11_2223 0.30 +0.5
459,656 + Ac3H11_2223 0.30 +0.7
459,656 + Ac3H11_2223 0.30 -0.6
459,657 - Ac3H11_2223 0.30 +2.3
459,851 - Ac3H11_2223 0.47 -0.1
459,851 - Ac3H11_2223 0.47 +2.7
459,972 - Ac3H11_2223 0.57 -0.4
460,029 + Ac3H11_2223 0.62 +0.4
460,029 + Ac3H11_2223 0.62 -0.9
460,029 + Ac3H11_2223 0.62 -0.8
460,029 + Ac3H11_2223 0.62 +0.9
460,029 + Ac3H11_2223 0.62 +2.2
460,029 + Ac3H11_2223 0.62 -0.8
460,029 + Ac3H11_2223 0.62 +0.5
460,029 + Ac3H11_2223 0.62 +0.1
460,030 - Ac3H11_2223 0.62 -0.4
460,030 - Ac3H11_2223 0.62 +0.5
460,064 + Ac3H11_2223 0.65 +1.3
460,064 + Ac3H11_2223 0.65 -2.0
460,065 - Ac3H11_2223 0.65 +0.2
460,065 - Ac3H11_2223 0.65 +0.4
460,363 - -0.4
460,575 + Ac3H11_2224 0.13 -1.7
460,575 + Ac3H11_2224 0.13 +0.2
460,575 + Ac3H11_2224 0.13 -0.9
460,575 + Ac3H11_2224 0.13 -2.0
460,575 + Ac3H11_2224 0.13 +0.0
460,576 - Ac3H11_2224 0.13 -0.8
460,576 - Ac3H11_2224 0.13 +0.5
460,576 - Ac3H11_2224 0.13 -0.7
460,576 - Ac3H11_2224 0.13 -1.0
460,576 - Ac3H11_2224 0.13 +2.5
460,576 - Ac3H11_2224 0.13 -0.3
460,668 + Ac3H11_2224 0.26 -3.1
460,668 + Ac3H11_2224 0.26 +1.1
460,668 + Ac3H11_2224 0.26 -0.4
460,668 + Ac3H11_2224 0.26 -0.4
460,668 + Ac3H11_2224 0.26 +0.5
460,668 + Ac3H11_2224 0.26 -0.1
460,668 + Ac3H11_2224 0.26 -1.7
460,669 - Ac3H11_2224 0.26 -1.2
460,669 - Ac3H11_2224 0.26 -1.5
460,669 - Ac3H11_2224 0.26 -1.8
460,677 + Ac3H11_2224 0.28 -0.2
460,677 + Ac3H11_2224 0.28 -1.4
460,678 - Ac3H11_2224 0.28 -0.3
460,774 - Ac3H11_2224 0.41 +0.2
460,774 - Ac3H11_2224 0.41 -1.2
460,774 - Ac3H11_2224 0.41 +1.7
460,774 - Ac3H11_2224 0.41 -1.3
460,774 - Ac3H11_2224 0.41 -0.7
460,872 + Ac3H11_2224 0.56 -2.7
460,872 + Ac3H11_2224 0.56 -1.8
460,872 + Ac3H11_2224 0.56 +1.9
460,873 - Ac3H11_2224 0.56 -0.3
460,873 - Ac3H11_2224 0.56 -0.6
460,873 - Ac3H11_2224 0.56 +0.1
460,873 - Ac3H11_2224 0.56 -0.8
461,210 - -0.3
461,212 + -0.8
461,217 + -0.6
461,246 + +1.1
461,247 - +1.4
461,247 - +1.8
461,381 + Ac3H11_2225 0.18 +1.5
461,411 + Ac3H11_2225 0.23 -0.1
461,411 + Ac3H11_2225 0.23 -0.8
461,411 + Ac3H11_2225 0.23 -1.0
461,412 - Ac3H11_2225 0.24 +2.1
461,412 - Ac3H11_2225 0.24 -0.1
461,412 - Ac3H11_2225 0.24 +0.2
461,582 + Ac3H11_2225 0.55 -2.9
461,582 + Ac3H11_2225 0.55 -1.6
461,582 + Ac3H11_2225 0.55 +0.8
461,582 + Ac3H11_2225 0.55 -0.4
461,582 + Ac3H11_2225 0.55 -1.9
461,583 - Ac3H11_2225 0.55 -1.1
461,583 - Ac3H11_2225 0.55 -0.8
461,583 - Ac3H11_2225 0.55 +1.2
461,583 - Ac3H11_2225 0.55 -2.3
461,583 - Ac3H11_2225 0.55 +0.4
461,583 - Ac3H11_2225 0.55 -0.4
461,583 - Ac3H11_2225 0.55 -0.1
461,583 - Ac3H11_2225 0.55 -2.1
461,583 - Ac3H11_2225 0.55 -0.1
461,583 - Ac3H11_2225 0.55 +0.1
461,583 - Ac3H11_2225 0.55 -0.2
461,585 + Ac3H11_2225 0.56 -1.5
461,585 + Ac3H11_2225 0.56 -0.7
461,585 + Ac3H11_2225 0.56 +0.0
461,586 - Ac3H11_2225 0.56 -0.5
461,586 - Ac3H11_2225 0.56 -0.3
461,586 - Ac3H11_2225 0.56 -1.7
461,611 + Ac3H11_2225 0.61 +0.3
461,611 + Ac3H11_2225 0.61 -0.3
461,612 - Ac3H11_2225 0.61 -2.2
461,612 - Ac3H11_2225 0.61 +0.1
461,693 + Ac3H11_2225 0.76 +0.7
461,693 + Ac3H11_2225 0.76 -2.0
461,693 + Ac3H11_2225 0.76 -2.5
461,694 - Ac3H11_2225 0.76 +0.3
461,694 - Ac3H11_2225 0.76 -0.7
461,694 - Ac3H11_2225 0.76 +0.3
461,694 - Ac3H11_2225 0.76 -0.1
461,694 - Ac3H11_2225 0.76 -0.7
461,694 - Ac3H11_2225 0.76 +0.7
461,694 - Ac3H11_2225 0.76 -0.2
461,711 + Ac3H11_2225 0.79 +0.5
461,712 - Ac3H11_2225 0.80 +0.6
461,712 - Ac3H11_2225 0.80 +0.9
461,712 - Ac3H11_2225 0.80 +2.1
461,723 + Ac3H11_2225 0.82 +1.7
461,724 - Ac3H11_2225 0.82 -2.0
461,724 - Ac3H11_2225 0.82 -1.1
461,724 - Ac3H11_2225 0.82 -0.6
461,724 - Ac3H11_2225 0.82 -3.0
461,724 - Ac3H11_2225 0.82 -0.7
461,751 - Ac3H11_2225 0.87 -2.7
461,751 - Ac3H11_2225 0.87 -1.1
461,808 - +0.3
461,811 + -1.0
461,811 + -0.3
461,812 - -1.9
461,812 - -0.4
461,832 + -2.0
461,832 + +2.1
461,833 - -0.4
461,838 - +0.2
461,870 - -1.9
461,874 - -1.8
461,953 - +0.8
462,034 - +0.7
462,040 + -0.6
462,131 + +1.3
462,132 - -1.7
462,134 - -4.4

Or see this region's nucleotide sequence