Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2190 and Ac3H11_2191 are separated by 136 nucleotides Ac3H11_2191 and Ac3H11_2192 are separated by 27 nucleotides Ac3H11_2192 and Ac3H11_2193 are separated by 289 nucleotides Ac3H11_2193 and Ac3H11_2194 are separated by 70 nucleotides
Ac3H11_2190 - Permease of the drug/metabolite transporter (DMT) superfamily, at 420,573 to 421,487
_2190
Ac3H11_2191 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 421,624 to 422,067
_2191
Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943
_2192
Ac3H11_2193 - UPF0311 protein RPA1785, at 423,233 to 423,616
_2193
Ac3H11_2194 - putative exported protein, at 423,687 to 424,688
_2194
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 421.195 kb on + strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.196 kb on - strand, within Ac3H11_2190 at 421.231 kb on + strand, within Ac3H11_2190 at 421.232 kb on - strand, within Ac3H11_2190 at 421.232 kb on - strand, within Ac3H11_2190 at 421.437 kb on + strand at 421.438 kb on - strand at 421.487 kb on + strand at 421.487 kb on + strand at 421.488 kb on - strand at 421.488 kb on - strand at 421.488 kb on - strand at 421.526 kb on + strand at 421.527 kb on - strand at 421.527 kb on - strand at 421.527 kb on - strand at 421.528 kb on + strand at 421.561 kb on - strand at 421.561 kb on - strand at 421.563 kb on + strand at 421.563 kb on + strand at 421.778 kb on + strand, within Ac3H11_2191 at 421.804 kb on + strand, within Ac3H11_2191 at 422.558 kb on + strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.559 kb on - strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.600 kb on + strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.601 kb on - strand, within Ac3H11_2192 at 422.732 kb on + strand, within Ac3H11_2192 at 422.733 kb on - strand, within Ac3H11_2192 at 422.819 kb on + strand, within Ac3H11_2192 at 423.082 kb on - strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.133 kb on - strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.369 kb on - strand, within Ac3H11_2193 at 423.369 kb on - strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.489 kb on - strand, within Ac3H11_2193 at 423.576 kb on - strand, within Ac3H11_2193 at 423.589 kb on - strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 421,195 + Ac3H11_2190 0.68 -1.8 421,196 - Ac3H11_2190 0.68 +1.6 421,196 - Ac3H11_2190 0.68 -0.6 421,196 - Ac3H11_2190 0.68 -1.3 421,231 + Ac3H11_2190 0.72 +1.3 421,232 - Ac3H11_2190 0.72 +0.2 421,232 - Ac3H11_2190 0.72 -0.0 421,437 + +0.7 421,438 - +0.2 421,487 + -1.5 421,487 + +0.5 421,488 - +0.3 421,488 - +1.4 421,488 - +0.8 421,526 + -2.6 421,527 - -1.9 421,527 - +0.2 421,527 - -0.6 421,528 + +1.5 421,561 - +0.4 421,561 - +0.4 421,563 + -0.1 421,563 + +0.3 421,778 + Ac3H11_2191 0.35 -1.1 421,804 + Ac3H11_2191 0.41 -2.5 422,558 + Ac3H11_2192 0.55 +0.5 422,559 - Ac3H11_2192 0.55 -2.0 422,559 - Ac3H11_2192 0.55 -1.6 422,559 - Ac3H11_2192 0.55 -0.2 422,600 + Ac3H11_2192 0.59 +0.9 422,600 + Ac3H11_2192 0.59 -0.0 422,600 + Ac3H11_2192 0.59 -0.3 422,601 - Ac3H11_2192 0.60 -2.5 422,601 - Ac3H11_2192 0.60 -2.5 422,601 - Ac3H11_2192 0.60 -0.8 422,601 - Ac3H11_2192 0.60 +0.1 422,732 + Ac3H11_2192 0.75 +1.1 422,733 - Ac3H11_2192 0.75 +0.6 422,819 + Ac3H11_2192 0.85 +1.5 423,082 - +0.9 423,127 + -1.1 423,127 + +0.4 423,127 + +0.4 423,127 + -0.1 423,127 + -1.0 423,127 + -0.8 423,127 + -1.2 423,128 - +1.0 423,128 - +1.0 423,128 - -0.3 423,128 - -0.9 423,128 - +0.0 423,132 + -0.5 423,132 + +0.2 423,132 + +0.9 423,132 + -0.9 423,133 - -0.3 423,139 + +1.5 423,139 + +1.0 423,139 + -0.7 423,139 + +0.4 423,139 + -0.8 423,139 + +0.4 423,139 + -1.8 423,140 - -1.5 423,140 - -0.5 423,140 - -3.5 423,140 - +0.3 423,140 - +1.5 423,140 - +0.6 423,140 - -0.7 423,140 - +0.4 423,140 - -0.3 423,368 + Ac3H11_2193 0.35 -0.9 423,368 + Ac3H11_2193 0.35 +0.3 423,368 + Ac3H11_2193 0.35 -0.3 423,368 + Ac3H11_2193 0.35 -0.5 423,369 - Ac3H11_2193 0.35 +1.1 423,369 - Ac3H11_2193 0.35 +0.5 423,401 + Ac3H11_2193 0.44 -0.1 423,401 + Ac3H11_2193 0.44 +0.1 423,401 + Ac3H11_2193 0.44 +0.0 423,401 + Ac3H11_2193 0.44 +0.7 423,401 + Ac3H11_2193 0.44 +2.1 423,401 + Ac3H11_2193 0.44 -2.5 423,402 - Ac3H11_2193 0.44 -0.9 423,402 - Ac3H11_2193 0.44 -0.3 423,402 - Ac3H11_2193 0.44 -2.6 423,402 - Ac3H11_2193 0.44 -2.8 423,402 - Ac3H11_2193 0.44 -1.9 423,402 - Ac3H11_2193 0.44 +1.9 423,402 - Ac3H11_2193 0.44 -1.6 423,402 - Ac3H11_2193 0.44 -1.5 423,488 + Ac3H11_2193 0.66 -2.4 423,488 + Ac3H11_2193 0.66 +3.7 423,488 + Ac3H11_2193 0.66 -0.1 423,488 + Ac3H11_2193 0.66 -1.5 423,488 + Ac3H11_2193 0.66 -2.5 423,489 - Ac3H11_2193 0.67 +0.4 423,576 - Ac3H11_2193 0.89 +0.1 423,589 - +1.6 423,668 + +0.2 423,668 + +0.0 423,668 + -0.7 423,668 + -0.1 423,668 + -0.3 423,668 + -0.3 423,668 + -0.3 423,668 + +0.9 423,668 + +0.1 423,669 - -0.8 423,669 - -0.1 423,669 - -0.2 423,669 - +1.5 423,669 - -1.1
Or see this region's nucleotide sequence