Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2084

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2082 and Ac3H11_2083 are separated by 38 nucleotidesAc3H11_2083 and Ac3H11_2084 are separated by 234 nucleotidesAc3H11_2084 and Ac3H11_2085 are separated by 133 nucleotides Ac3H11_2082 - Phosphogluconate dehydratase (EC 4.2.1.12), at 307,523 to 309,292 _2082 Ac3H11_2083 - 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14), at 309,331 to 309,960 _2083 Ac3H11_2084 - protein of unknown function DUF805, at 310,195 to 310,497 _2084 Ac3H11_2085 - hypothetical protein, at 310,631 to 311,494 _2085 Position (kb) 310 311Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 309.290 kb on + strandat 309.290 kb on + strandat 309.290 kb on + strandat 309.291 kb on - strandat 309.291 kb on - strandat 309.291 kb on - strandat 309.291 kb on - strandat 309.291 kb on - strandat 309.303 kb on - strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.314 kb on + strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.315 kb on - strandat 309.318 kb on + strandat 309.318 kb on + strandat 309.318 kb on + strandat 309.318 kb on + strandat 309.319 kb on - strandat 309.393 kb on - strandat 309.808 kb on - strandat 309.829 kb on + strand, within Ac3H11_2083at 309.829 kb on + strand, within Ac3H11_2083at 309.981 kb on + strandat 310.016 kb on - strandat 310.028 kb on - strandat 310.127 kb on - strandat 310.195 kb on - strandat 310.234 kb on + strand, within Ac3H11_2084at 310.234 kb on + strand, within Ac3H11_2084at 310.336 kb on + strand, within Ac3H11_2084at 310.337 kb on - strand, within Ac3H11_2084at 310.337 kb on - strand, within Ac3H11_2084at 310.337 kb on - strand, within Ac3H11_2084at 310.465 kb on + strand, within Ac3H11_2084at 310.465 kb on + strand, within Ac3H11_2084at 310.465 kb on + strand, within Ac3H11_2084at 310.465 kb on + strand, within Ac3H11_2084at 310.465 kb on + strand, within Ac3H11_2084at 310.466 kb on - strand, within Ac3H11_2084at 310.466 kb on - strand, within Ac3H11_2084at 310.466 kb on - strand, within Ac3H11_2084at 310.668 kb on + strandat 310.669 kb on - strandat 310.669 kb on - strandat 310.669 kb on - strandat 310.713 kb on + strandat 310.713 kb on + strandat 310.713 kb on + strandat 310.713 kb on + strandat 310.713 kb on + strandat 310.713 kb on + strandat 310.714 kb on - strandat 310.714 kb on - strandat 310.714 kb on - strandat 310.714 kb on - strandat 310.759 kb on - strand, within Ac3H11_2085at 310.918 kb on - strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.993 kb on + strand, within Ac3H11_2085at 310.993 kb on + strand, within Ac3H11_2085at 310.993 kb on + strand, within Ac3H11_2085at 310.993 kb on + strand, within Ac3H11_2085at 310.994 kb on - strand, within Ac3H11_2085at 310.994 kb on - strand, within Ac3H11_2085at 310.994 kb on - strand, within Ac3H11_2085at 310.994 kb on - strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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309,290 + -2.7
309,290 + +0.9
309,290 + -1.9
309,291 - -0.4
309,291 - -3.2
309,291 - +1.2
309,291 - -0.2
309,291 - -1.0
309,303 - -2.8
309,314 + -0.1
309,314 + +0.5
309,314 + +2.1
309,314 + +0.3
309,314 + +1.6
309,314 + +2.1
309,314 + -0.0
309,314 + +0.1
309,314 + -0.3
309,315 - -1.5
309,315 - +0.7
309,315 - -2.5
309,315 - +1.3
309,315 - -1.9
309,315 - +1.4
309,315 - +1.5
309,315 - -0.8
309,318 + +1.4
309,318 + +1.7
309,318 + +1.9
309,318 + +1.0
309,319 - -0.0
309,393 - +1.5
309,808 - -1.0
309,829 + Ac3H11_2083 0.79 +3.9
309,829 + Ac3H11_2083 0.79 -1.3
309,981 + +1.1
310,016 - +1.4
310,028 - -0.4
310,127 - +0.6
310,195 - -2.8
310,234 + Ac3H11_2084 0.13 +1.2
310,234 + Ac3H11_2084 0.13 -1.4
310,336 + Ac3H11_2084 0.47 +0.2
310,337 - Ac3H11_2084 0.47 -0.8
310,337 - Ac3H11_2084 0.47 -0.7
310,337 - Ac3H11_2084 0.47 -2.0
310,465 + Ac3H11_2084 0.89 +0.5
310,465 + Ac3H11_2084 0.89 +0.9
310,465 + Ac3H11_2084 0.89 -1.0
310,465 + Ac3H11_2084 0.89 +0.5
310,465 + Ac3H11_2084 0.89 -0.3
310,466 - Ac3H11_2084 0.89 -2.5
310,466 - Ac3H11_2084 0.89 -0.1
310,466 - Ac3H11_2084 0.89 +0.2
310,668 + -0.0
310,669 - +1.7
310,669 - -1.6
310,669 - +3.0
310,713 + +0.2
310,713 + +0.7
310,713 + +0.5
310,713 + +0.6
310,713 + -1.0
310,713 + -0.0
310,714 - -1.5
310,714 - +1.4
310,714 - +1.3
310,714 - +0.4
310,759 - Ac3H11_2085 0.15 +0.7
310,918 - Ac3H11_2085 0.33 +1.1
310,969 + Ac3H11_2085 0.39 +0.6
310,969 + Ac3H11_2085 0.39 +1.4
310,969 + Ac3H11_2085 0.39 +1.1
310,969 + Ac3H11_2085 0.39 +0.3
310,969 + Ac3H11_2085 0.39 -0.4
310,969 + Ac3H11_2085 0.39 +0.5
310,969 + Ac3H11_2085 0.39 +2.1
310,969 + Ac3H11_2085 0.39 +0.7
310,969 + Ac3H11_2085 0.39 +0.6
310,969 + Ac3H11_2085 0.39 +0.1
310,969 + Ac3H11_2085 0.39 -1.0
310,969 + Ac3H11_2085 0.39 +0.5
310,969 + Ac3H11_2085 0.39 +0.1
310,969 + Ac3H11_2085 0.39 +1.7
310,969 + Ac3H11_2085 0.39 -0.8
310,969 + Ac3H11_2085 0.39 -1.2
310,969 + Ac3H11_2085 0.39 +1.1
310,969 + Ac3H11_2085 0.39 +0.4
310,969 + Ac3H11_2085 0.39 -0.2
310,969 + Ac3H11_2085 0.39 +0.8
310,969 + Ac3H11_2085 0.39 -0.3
310,970 - Ac3H11_2085 0.39 +0.2
310,970 - Ac3H11_2085 0.39 -0.8
310,970 - Ac3H11_2085 0.39 +0.6
310,970 - Ac3H11_2085 0.39 -0.6
310,970 - Ac3H11_2085 0.39 -0.9
310,970 - Ac3H11_2085 0.39 +1.4
310,970 - Ac3H11_2085 0.39 -0.3
310,970 - Ac3H11_2085 0.39 -1.6
310,970 - Ac3H11_2085 0.39 -1.2
310,970 - Ac3H11_2085 0.39 -0.6
310,970 - Ac3H11_2085 0.39 -0.2
310,970 - Ac3H11_2085 0.39 +0.1
310,970 - Ac3H11_2085 0.39 -0.3
310,970 - Ac3H11_2085 0.39 +0.9
310,970 - Ac3H11_2085 0.39 -1.1
310,970 - Ac3H11_2085 0.39 +0.8
310,970 - Ac3H11_2085 0.39 +2.0
310,993 + Ac3H11_2085 0.42 -0.9
310,993 + Ac3H11_2085 0.42 +0.3
310,993 + Ac3H11_2085 0.42 +0.2
310,993 + Ac3H11_2085 0.42 -1.6
310,994 - Ac3H11_2085 0.42 -1.1
310,994 - Ac3H11_2085 0.42 +0.9
310,994 - Ac3H11_2085 0.42 +2.0
310,994 - Ac3H11_2085 0.42 -2.0
311,115 + Ac3H11_2085 0.56 -0.3
311,115 + Ac3H11_2085 0.56 -3.0
311,115 + Ac3H11_2085 0.56 -1.3
311,115 + Ac3H11_2085 0.56 -0.1
311,115 + Ac3H11_2085 0.56 -2.2
311,115 + Ac3H11_2085 0.56 +1.5
311,115 + Ac3H11_2085 0.56 -0.1
311,115 + Ac3H11_2085 0.56 +1.7
311,116 - Ac3H11_2085 0.56 +0.2
311,116 - Ac3H11_2085 0.56 -0.3
311,116 - Ac3H11_2085 0.56 -3.9
311,116 - Ac3H11_2085 0.56 -0.5
311,116 - Ac3H11_2085 0.56 +0.3
311,116 - Ac3H11_2085 0.56 +0.7

Or see this region's nucleotide sequence