Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1978

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1977 and Ac3H11_1978 are separated by 71 nucleotidesAc3H11_1978 and Ac3H11_2979 are separated by 312 nucleotidesAc3H11_2979 and Ac3H11_1979 are separated by 345 nucleotides Ac3H11_1977 - Protein RtcB, at 189,431 to 190,702 _1977 Ac3H11_1978 - Putative stomatin/prohibitin-family membrane protease subunit aq_911, at 190,774 to 191,916 _1978 Ac3H11_2979 - tRNA-Undet-???, at 192,229 to 192,300 _2979 Ac3H11_1979 - Transcriptional regulatory protein RtcR, at 192,646 to 194,274 _1979 Position (kb) 190 191 192Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 189.810 kb on + strand, within Ac3H11_1977at 189.810 kb on + strand, within Ac3H11_1977at 189.810 kb on + strand, within Ac3H11_1977at 189.810 kb on + strand, within Ac3H11_1977at 189.811 kb on - strand, within Ac3H11_1977at 189.811 kb on - strand, within Ac3H11_1977at 189.951 kb on + strand, within Ac3H11_1977at 189.951 kb on + strand, within Ac3H11_1977at 189.951 kb on + strand, within Ac3H11_1977at 189.951 kb on + strand, within Ac3H11_1977at 189.951 kb on + strand, within Ac3H11_1977at 189.951 kb on + strand, within Ac3H11_1977at 189.951 kb on + strand, within Ac3H11_1977at 189.952 kb on - strand, within Ac3H11_1977at 189.964 kb on - strand, within Ac3H11_1977at 189.985 kb on - strand, within Ac3H11_1977at 190.124 kb on + strand, within Ac3H11_1977at 190.176 kb on + strand, within Ac3H11_1977at 190.176 kb on + strand, within Ac3H11_1977at 190.176 kb on + strand, within Ac3H11_1977at 190.176 kb on + strand, within Ac3H11_1977at 190.176 kb on + strand, within Ac3H11_1977at 190.176 kb on + strand, within Ac3H11_1977at 190.177 kb on - strand, within Ac3H11_1977at 190.177 kb on - strand, within Ac3H11_1977at 190.177 kb on - strand, within Ac3H11_1977at 190.177 kb on - strand, within Ac3H11_1977at 190.632 kb on + strandat 190.632 kb on + strandat 190.632 kb on + strandat 190.632 kb on + strandat 190.641 kb on + strandat 190.641 kb on + strandat 190.642 kb on - strandat 191.112 kb on - strand, within Ac3H11_1978at 191.249 kb on + strand, within Ac3H11_1978at 191.250 kb on - strand, within Ac3H11_1978at 191.250 kb on - strand, within Ac3H11_1978at 191.255 kb on + strand, within Ac3H11_1978at 191.255 kb on + strand, within Ac3H11_1978at 191.255 kb on + strand, within Ac3H11_1978at 191.255 kb on + strand, within Ac3H11_1978at 191.256 kb on - strand, within Ac3H11_1978at 191.387 kb on + strand, within Ac3H11_1978at 191.387 kb on + strand, within Ac3H11_1978at 191.388 kb on - strand, within Ac3H11_1978at 191.388 kb on - strand, within Ac3H11_1978at 191.603 kb on + strand, within Ac3H11_1978at 191.735 kb on + strand, within Ac3H11_1978at 191.736 kb on - strand, within Ac3H11_1978at 191.786 kb on - strand, within Ac3H11_1978at 191.786 kb on - strand, within Ac3H11_1978at 191.819 kb on + strandat 191.819 kb on + strandat 191.819 kb on + strandat 191.820 kb on - strandat 191.820 kb on - strandat 191.820 kb on - strandat 192.208 kb on + strandat 192.208 kb on + strandat 192.209 kb on - strandat 192.279 kb on - strand, within Ac3H11_2979at 192.291 kb on + strand, within Ac3H11_2979at 192.292 kb on - strand, within Ac3H11_2979at 192.292 kb on - strand, within Ac3H11_2979at 192.292 kb on - strand, within Ac3H11_2979at 192.292 kb on - strand, within Ac3H11_2979at 192.449 kb on + strandat 192.522 kb on + strandat 192.522 kb on + strandat 192.522 kb on + strandat 192.522 kb on + strandat 192.522 kb on + strandat 192.523 kb on - strandat 192.523 kb on - strandat 192.523 kb on - strandat 192.523 kb on - strandat 192.523 kb on - strandat 192.614 kb on - strandat 192.633 kb on + strandat 192.787 kb on + strandat 192.787 kb on + strandat 192.788 kb on - strandat 192.788 kb on - strandat 192.910 kb on + strand, within Ac3H11_1979at 192.910 kb on + strand, within Ac3H11_1979at 192.910 kb on + strand, within Ac3H11_1979at 192.910 kb on + strand, within Ac3H11_1979at 192.910 kb on + strand, within Ac3H11_1979at 192.910 kb on + strand, within Ac3H11_1979at 192.910 kb on + strand, within Ac3H11_1979at 192.911 kb on - strand, within Ac3H11_1979

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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189,810 + Ac3H11_1977 0.30 -2.6
189,810 + Ac3H11_1977 0.30 +0.9
189,810 + Ac3H11_1977 0.30 -0.8
189,810 + Ac3H11_1977 0.30 -0.4
189,811 - Ac3H11_1977 0.30 +1.6
189,811 - Ac3H11_1977 0.30 -3.9
189,951 + Ac3H11_1977 0.41 -0.4
189,951 + Ac3H11_1977 0.41 +0.1
189,951 + Ac3H11_1977 0.41 -0.7
189,951 + Ac3H11_1977 0.41 +0.7
189,951 + Ac3H11_1977 0.41 +1.2
189,951 + Ac3H11_1977 0.41 -1.8
189,951 + Ac3H11_1977 0.41 -0.1
189,952 - Ac3H11_1977 0.41 -2.4
189,964 - Ac3H11_1977 0.42 -4.2
189,985 - Ac3H11_1977 0.44 +0.2
190,124 + Ac3H11_1977 0.54 +1.0
190,176 + Ac3H11_1977 0.59 +0.9
190,176 + Ac3H11_1977 0.59 -2.3
190,176 + Ac3H11_1977 0.59 -0.0
190,176 + Ac3H11_1977 0.59 -1.3
190,176 + Ac3H11_1977 0.59 -1.1
190,176 + Ac3H11_1977 0.59 +1.4
190,177 - Ac3H11_1977 0.59 -0.0
190,177 - Ac3H11_1977 0.59 +0.5
190,177 - Ac3H11_1977 0.59 +0.4
190,177 - Ac3H11_1977 0.59 -1.0
190,632 + +0.1
190,632 + -1.0
190,632 + -0.3
190,632 + -0.4
190,641 + -0.1
190,641 + -2.0
190,642 - +1.7
191,112 - Ac3H11_1978 0.30 -0.3
191,249 + Ac3H11_1978 0.42 +1.0
191,250 - Ac3H11_1978 0.42 -0.5
191,250 - Ac3H11_1978 0.42 -0.8
191,255 + Ac3H11_1978 0.42 -0.5
191,255 + Ac3H11_1978 0.42 -0.7
191,255 + Ac3H11_1978 0.42 +0.0
191,255 + Ac3H11_1978 0.42 -0.8
191,256 - Ac3H11_1978 0.42 -0.2
191,387 + Ac3H11_1978 0.54 -0.1
191,387 + Ac3H11_1978 0.54 +0.6
191,388 - Ac3H11_1978 0.54 -1.3
191,388 - Ac3H11_1978 0.54 -0.8
191,603 + Ac3H11_1978 0.73 +1.8
191,735 + Ac3H11_1978 0.84 +1.0
191,736 - Ac3H11_1978 0.84 +1.0
191,786 - Ac3H11_1978 0.89 +0.2
191,786 - Ac3H11_1978 0.89 -1.0
191,819 + +0.1
191,819 + +0.5
191,819 + +0.4
191,820 - +0.7
191,820 - +1.2
191,820 - -0.4
192,208 + -0.8
192,208 + -2.6
192,209 - +0.3
192,279 - Ac3H11_2979 0.69 +0.5
192,291 + Ac3H11_2979 0.86 +0.5
192,292 - Ac3H11_2979 0.88 -1.5
192,292 - Ac3H11_2979 0.88 +0.4
192,292 - Ac3H11_2979 0.88 +0.7
192,292 - Ac3H11_2979 0.88 -1.0
192,449 + +1.6
192,522 + -0.2
192,522 + -3.6
192,522 + +0.8
192,522 + -0.8
192,522 + +0.8
192,523 - -3.3
192,523 - -0.5
192,523 - +0.9
192,523 - +0.4
192,523 - -1.0
192,614 - -0.3
192,633 + +1.2
192,787 + +1.0
192,787 + +0.4
192,788 - +0.4
192,788 - -3.2
192,910 + Ac3H11_1979 0.16 -1.8
192,910 + Ac3H11_1979 0.16 -0.1
192,910 + Ac3H11_1979 0.16 -1.2
192,910 + Ac3H11_1979 0.16 -4.0
192,910 + Ac3H11_1979 0.16 +0.8
192,910 + Ac3H11_1979 0.16 +1.6
192,910 + Ac3H11_1979 0.16 -2.6
192,911 - Ac3H11_1979 0.16 -1.8

Or see this region's nucleotide sequence