Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_179

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_178 and Ac3H11_179 are separated by 184 nucleotidesAc3H11_179 and Ac3H11_180 are separated by 196 nucleotidesAc3H11_180 and Ac3H11_181 are separated by 138 nucleotides Ac3H11_178 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 66,255 to 67,439 _178 Ac3H11_179 - Tricarboxylate transport protein TctC, at 67,624 to 68,607 _179 Ac3H11_180 - Universal stress protein family, at 68,804 to 69,241 _180 Ac3H11_181 - FIG00538743: hypothetical protein, at 69,380 to 70,156 _181 Position (kb) 67 68 69Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 66.837 kb on + strand, within Ac3H11_178at 66.838 kb on - strand, within Ac3H11_178at 66.894 kb on + strand, within Ac3H11_178at 66.894 kb on + strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.278 kb on - strand, within Ac3H11_178at 67.384 kb on + strandat 67.385 kb on - strandat 67.442 kb on + strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.711 kb on + strandat 67.945 kb on + strand, within Ac3H11_179at 67.945 kb on + strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.185 kb on + strand, within Ac3H11_179at 68.185 kb on + strand, within Ac3H11_179at 68.186 kb on - strand, within Ac3H11_179at 68.390 kb on - strand, within Ac3H11_179at 68.557 kb on + strandat 68.557 kb on + strandat 68.557 kb on + strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.733 kb on - strandat 68.733 kb on - strandat 69.069 kb on + strand, within Ac3H11_180at 69.069 kb on + strand, within Ac3H11_180at 69.069 kb on + strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.084 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.254 kb on + strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.277 kb on + strandat 69.277 kb on + strandat 69.278 kb on - strandat 69.278 kb on - strandat 69.278 kb on - strandat 69.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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66,837 + Ac3H11_178 0.49 +0.2
66,838 - Ac3H11_178 0.49 +0.2
66,894 + Ac3H11_178 0.54 -0.3
66,894 + Ac3H11_178 0.54 -3.0
66,895 - Ac3H11_178 0.54 -0.4
66,895 - Ac3H11_178 0.54 -0.2
66,895 - Ac3H11_178 0.54 +2.2
66,895 - Ac3H11_178 0.54 -1.2
67,119 + Ac3H11_178 0.73 +2.9
67,119 + Ac3H11_178 0.73 -1.0
67,119 + Ac3H11_178 0.73 +0.7
67,119 + Ac3H11_178 0.73 +0.5
67,119 + Ac3H11_178 0.73 -0.6
67,119 + Ac3H11_178 0.73 -0.7
67,119 + Ac3H11_178 0.73 +1.2
67,120 - Ac3H11_178 0.73 -0.8
67,120 - Ac3H11_178 0.73 -0.2
67,120 - Ac3H11_178 0.73 -0.9
67,120 - Ac3H11_178 0.73 +0.4
67,278 - Ac3H11_178 0.86 +0.3
67,384 + -0.8
67,385 - +0.3
67,442 + -1.8
67,443 - -2.2
67,443 - -3.1
67,443 - -0.4
67,443 - +1.3
67,711 + -2.3
67,945 + Ac3H11_179 0.33 +1.2
67,945 + Ac3H11_179 0.33 +0.5
67,946 - Ac3H11_179 0.33 -2.6
67,946 - Ac3H11_179 0.33 +1.7
67,946 - Ac3H11_179 0.33 +0.6
67,946 - Ac3H11_179 0.33 +0.5
68,041 + Ac3H11_179 0.42 +1.7
68,041 + Ac3H11_179 0.42 +0.7
68,041 + Ac3H11_179 0.42 -2.3
68,042 - Ac3H11_179 0.42 +0.4
68,042 - Ac3H11_179 0.42 -2.4
68,042 - Ac3H11_179 0.42 -1.0
68,042 - Ac3H11_179 0.42 +1.6
68,098 + Ac3H11_179 0.48 +0.6
68,098 + Ac3H11_179 0.48 +0.4
68,098 + Ac3H11_179 0.48 +1.4
68,098 + Ac3H11_179 0.48 +1.4
68,098 + Ac3H11_179 0.48 -0.7
68,098 + Ac3H11_179 0.48 +0.8
68,098 + Ac3H11_179 0.48 -1.4
68,099 - Ac3H11_179 0.48 -2.1
68,099 - Ac3H11_179 0.48 -0.8
68,099 - Ac3H11_179 0.48 +0.8
68,099 - Ac3H11_179 0.48 +0.7
68,099 - Ac3H11_179 0.48 -2.1
68,099 - Ac3H11_179 0.48 -2.1
68,099 - Ac3H11_179 0.48 +0.7
68,099 - Ac3H11_179 0.48 -1.1
68,099 - Ac3H11_179 0.48 -1.3
68,099 - Ac3H11_179 0.48 +0.2
68,185 + Ac3H11_179 0.57 +0.9
68,185 + Ac3H11_179 0.57 -2.2
68,186 - Ac3H11_179 0.57 -3.0
68,390 - Ac3H11_179 0.78 +1.0
68,557 + +0.3
68,557 + +0.8
68,557 + -0.5
68,558 - +2.0
68,558 - -0.2
68,558 - -0.8
68,558 - +2.7
68,733 - -1.4
68,733 - -3.8
69,069 + Ac3H11_180 0.61 +0.6
69,069 + Ac3H11_180 0.61 +1.0
69,069 + Ac3H11_180 0.61 +1.6
69,070 - Ac3H11_180 0.61 -1.1
69,070 - Ac3H11_180 0.61 -0.1
69,070 - Ac3H11_180 0.61 -0.3
69,070 - Ac3H11_180 0.61 +0.1
69,070 - Ac3H11_180 0.61 -0.8
69,070 - Ac3H11_180 0.61 -1.5
69,084 + Ac3H11_180 0.64 +0.5
69,132 + Ac3H11_180 0.75 +2.7
69,132 + Ac3H11_180 0.75 -0.1
69,132 + Ac3H11_180 0.75 +0.7
69,132 + Ac3H11_180 0.75 -1.1
69,132 + Ac3H11_180 0.75 +2.0
69,132 + Ac3H11_180 0.75 -0.6
69,133 - Ac3H11_180 0.75 +0.4
69,133 - Ac3H11_180 0.75 +1.3
69,133 - Ac3H11_180 0.75 -1.0
69,133 - Ac3H11_180 0.75 -1.7
69,133 - Ac3H11_180 0.75 +1.0
69,247 + -0.1
69,247 + -3.8
69,247 + +0.6
69,247 + +0.5
69,247 + +0.4
69,248 - -0.2
69,248 - +1.1
69,248 - +0.2
69,248 - +0.4
69,248 - -0.5
69,254 + -3.0
69,255 - -1.9
69,255 - -3.0
69,255 - -1.4
69,255 - +0.5
69,277 + +0.4
69,277 + +0.0
69,278 - -0.4
69,278 - +1.1
69,278 - -1.2
69,333 - +0.8

Or see this region's nucleotide sequence