Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1220

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1218 and Ac3H11_1219 overlap by 4 nucleotidesAc3H11_1219 and Ac3H11_1220 overlap by 4 nucleotidesAc3H11_1220 and Ac3H11_1221 are separated by 20 nucleotidesAc3H11_1221 and Ac3H11_1222 are separated by 14 nucleotides Ac3H11_1218 - S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase, at 37,131 to 38,375 _1218 Ac3H11_1219 - FIG026291: Hypothetical periplasmic protein, at 38,372 to 38,968 _1219 Ac3H11_1220 - FIG097052: Sugar transporter, at 38,965 to 40,248 _1220 Ac3H11_1221 - FIG002577: Putative lipoprotein precursor, at 40,269 to 40,808 _1221 Ac3H11_1222 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 40,823 to 41,587 _1222 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 37.968 kb on + strand, within Ac3H11_1218at 37.981 kb on - strand, within Ac3H11_1218at 37.981 kb on - strand, within Ac3H11_1218at 38.067 kb on + strand, within Ac3H11_1218at 38.067 kb on + strand, within Ac3H11_1218at 38.067 kb on + strand, within Ac3H11_1218at 38.067 kb on + strand, within Ac3H11_1218at 38.068 kb on - strand, within Ac3H11_1218at 38.097 kb on + strand, within Ac3H11_1218at 38.097 kb on + strand, within Ac3H11_1218at 38.097 kb on + strand, within Ac3H11_1218at 38.097 kb on + strand, within Ac3H11_1218at 38.097 kb on + strand, within Ac3H11_1218at 38.097 kb on + strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.098 kb on - strand, within Ac3H11_1218at 38.200 kb on - strand, within Ac3H11_1218at 38.301 kb on + strandat 38.302 kb on - strandat 38.311 kb on - strandat 38.355 kb on + strandat 38.355 kb on + strandat 38.356 kb on - strandat 38.396 kb on - strandat 38.558 kb on + strand, within Ac3H11_1219at 38.559 kb on - strand, within Ac3H11_1219at 38.603 kb on + strand, within Ac3H11_1219at 38.636 kb on + strand, within Ac3H11_1219at 38.636 kb on + strand, within Ac3H11_1219at 38.636 kb on + strand, within Ac3H11_1219at 38.637 kb on - strand, within Ac3H11_1219at 38.637 kb on - strand, within Ac3H11_1219at 38.793 kb on - strand, within Ac3H11_1219at 39.008 kb on - strandat 39.052 kb on + strandat 39.052 kb on + strandat 39.052 kb on + strandat 39.052 kb on + strandat 39.053 kb on - strandat 39.053 kb on - strandat 39.053 kb on - strandat 39.053 kb on - strandat 39.073 kb on + strandat 39.276 kb on - strand, within Ac3H11_1220at 39.328 kb on + strand, within Ac3H11_1220at 39.337 kb on + strand, within Ac3H11_1220at 39.338 kb on - strand, within Ac3H11_1220at 39.450 kb on - strand, within Ac3H11_1220at 39.532 kb on + strand, within Ac3H11_1220at 39.757 kb on + strand, within Ac3H11_1220at 39.758 kb on - strand, within Ac3H11_1220at 39.758 kb on - strand, within Ac3H11_1220at 40.022 kb on - strand, within Ac3H11_1220at 40.022 kb on - strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.156 kb on + strandat 40.156 kb on + strandat 40.204 kb on + strandat 40.204 kb on + strandat 40.205 kb on - strandat 40.205 kb on - strandat 40.386 kb on + strand, within Ac3H11_1221at 40.386 kb on + strand, within Ac3H11_1221at 40.387 kb on - strand, within Ac3H11_1221at 40.387 kb on - strand, within Ac3H11_1221at 40.515 kb on + strand, within Ac3H11_1221at 40.515 kb on + strand, within Ac3H11_1221at 40.516 kb on - strand, within Ac3H11_1221at 40.516 kb on - strand, within Ac3H11_1221at 40.647 kb on + strand, within Ac3H11_1221at 40.648 kb on - strand, within Ac3H11_1221at 40.648 kb on - strand, within Ac3H11_1221at 40.707 kb on + strand, within Ac3H11_1221at 40.707 kb on + strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.085 kb on - strand, within Ac3H11_1222at 41.087 kb on + strand, within Ac3H11_1222at 41.088 kb on - strand, within Ac3H11_1222at 41.150 kb on + strand, within Ac3H11_1222at 41.150 kb on + strand, within Ac3H11_1222

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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37,968 + Ac3H11_1218 0.67 +0.2
37,981 - Ac3H11_1218 0.68 +1.0
37,981 - Ac3H11_1218 0.68 -1.1
38,067 + Ac3H11_1218 0.75 +0.6
38,067 + Ac3H11_1218 0.75 -1.4
38,067 + Ac3H11_1218 0.75 -0.1
38,067 + Ac3H11_1218 0.75 -0.8
38,068 - Ac3H11_1218 0.75 -0.7
38,097 + Ac3H11_1218 0.78 -1.8
38,097 + Ac3H11_1218 0.78 -3.3
38,097 + Ac3H11_1218 0.78 -0.2
38,097 + Ac3H11_1218 0.78 +0.4
38,097 + Ac3H11_1218 0.78 -0.3
38,097 + Ac3H11_1218 0.78 -0.5
38,098 - Ac3H11_1218 0.78 +0.6
38,098 - Ac3H11_1218 0.78 +1.7
38,098 - Ac3H11_1218 0.78 -0.8
38,098 - Ac3H11_1218 0.78 +0.6
38,098 - Ac3H11_1218 0.78 -0.5
38,098 - Ac3H11_1218 0.78 +0.1
38,098 - Ac3H11_1218 0.78 -3.7
38,098 - Ac3H11_1218 0.78 -0.5
38,098 - Ac3H11_1218 0.78 -0.3
38,200 - Ac3H11_1218 0.86 +2.4
38,301 + -2.4
38,302 - +0.3
38,311 - -1.9
38,355 + +0.0
38,355 + +0.9
38,356 - -0.4
38,396 - +0.6
38,558 + Ac3H11_1219 0.31 +0.8
38,559 - Ac3H11_1219 0.31 +0.2
38,603 + Ac3H11_1219 0.39 +2.3
38,636 + Ac3H11_1219 0.44 +0.4
38,636 + Ac3H11_1219 0.44 +0.1
38,636 + Ac3H11_1219 0.44 +0.1
38,637 - Ac3H11_1219 0.44 -2.6
38,637 - Ac3H11_1219 0.44 +0.3
38,793 - Ac3H11_1219 0.71 +0.6
39,008 - -0.5
39,052 + -0.6
39,052 + -0.1
39,052 + +0.1
39,052 + -0.2
39,053 - -0.9
39,053 - +0.5
39,053 - -0.2
39,053 - +1.9
39,073 + -0.2
39,276 - Ac3H11_1220 0.24 -1.2
39,328 + Ac3H11_1220 0.28 +0.3
39,337 + Ac3H11_1220 0.29 -0.1
39,338 - Ac3H11_1220 0.29 -0.1
39,450 - Ac3H11_1220 0.38 +1.1
39,532 + Ac3H11_1220 0.44 -1.9
39,757 + Ac3H11_1220 0.62 -0.9
39,758 - Ac3H11_1220 0.62 -1.4
39,758 - Ac3H11_1220 0.62 +0.2
40,022 - Ac3H11_1220 0.82 +0.3
40,022 - Ac3H11_1220 0.82 +0.8
40,105 + Ac3H11_1220 0.89 -3.1
40,105 + Ac3H11_1220 0.89 +1.2
40,105 + Ac3H11_1220 0.89 +0.8
40,105 + Ac3H11_1220 0.89 +0.7
40,156 + -0.1
40,156 + -0.1
40,204 + +0.2
40,204 + -0.4
40,205 - -0.9
40,205 - +1.1
40,386 + Ac3H11_1221 0.22 -1.2
40,386 + Ac3H11_1221 0.22 +0.2
40,387 - Ac3H11_1221 0.22 +1.1
40,387 - Ac3H11_1221 0.22 +0.6
40,515 + Ac3H11_1221 0.46 -0.4
40,515 + Ac3H11_1221 0.46 +0.3
40,516 - Ac3H11_1221 0.46 -1.2
40,516 - Ac3H11_1221 0.46 -0.3
40,647 + Ac3H11_1221 0.70 +1.9
40,648 - Ac3H11_1221 0.70 -1.4
40,648 - Ac3H11_1221 0.70 -0.3
40,707 + Ac3H11_1221 0.81 -2.0
40,707 + Ac3H11_1221 0.81 -0.9
40,708 - Ac3H11_1221 0.81 -1.4
40,708 - Ac3H11_1221 0.81 +1.4
40,708 - Ac3H11_1221 0.81 -1.2
40,708 - Ac3H11_1221 0.81 -0.1
40,708 - Ac3H11_1221 0.81 -3.2
41,072 + Ac3H11_1222 0.33 +0.7
41,072 + Ac3H11_1222 0.33 -1.7
41,072 + Ac3H11_1222 0.33 -3.6
41,072 + Ac3H11_1222 0.33 +0.1
41,085 - Ac3H11_1222 0.34 -1.4
41,087 + Ac3H11_1222 0.35 +0.1
41,088 - Ac3H11_1222 0.35 +1.4
41,150 + Ac3H11_1222 0.43 +0.5
41,150 + Ac3H11_1222 0.43 -1.0

Or see this region's nucleotide sequence