Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1154

Experiment: Sisomicin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1151 and Ac3H11_1152 overlap by 2 nucleotidesAc3H11_1152 and Ac3H11_1153 are separated by 109 nucleotidesAc3H11_1153 and Ac3H11_1154 overlap by 17 nucleotidesAc3H11_1154 and Ac3H11_1155 are separated by 185 nucleotides Ac3H11_1151 - hypothetical protein, at 104,026 to 104,154 _1151 Ac3H11_1152 - hypothetical protein, at 104,153 to 104,401 _1152 Ac3H11_1153 - hypothetical protein, at 104,511 to 105,059 _1153 Ac3H11_1154 - hypothetical protein, at 105,043 to 105,876 _1154 Ac3H11_1155 - hypothetical protein, at 106,062 to 108,068 _1155 Position (kb) 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1at 104.159 kb on + strandat 104.159 kb on + strandat 104.159 kb on + strandat 104.159 kb on + strandat 104.159 kb on + strandat 104.159 kb on + strandat 104.159 kb on + strandat 104.159 kb on + strandat 104.159 kb on + strandat 104.160 kb on - strandat 104.198 kb on + strand, within Ac3H11_1152at 104.198 kb on + strand, within Ac3H11_1152at 104.199 kb on - strand, within Ac3H11_1152at 104.199 kb on - strand, within Ac3H11_1152at 104.199 kb on - strand, within Ac3H11_1152at 104.399 kb on + strandat 104.399 kb on + strandat 104.400 kb on - strandat 104.400 kb on - strandat 104.400 kb on - strandat 104.400 kb on - strandat 104.400 kb on - strandat 105.074 kb on + strandat 105.081 kb on - strandat 105.951 kb on + strandat 106.013 kb on + strandat 106.077 kb on + strandat 106.077 kb on + strandat 106.077 kb on + strandat 106.077 kb on + strandat 106.077 kb on + strandat 106.077 kb on + strandat 106.077 kb on + strandat 106.077 kb on + strandat 106.078 kb on - strandat 106.078 kb on - strandat 106.078 kb on - strandat 106.078 kb on - strandat 106.078 kb on - strandat 106.078 kb on - strandat 106.078 kb on - strandat 106.078 kb on - strandat 106.209 kb on + strandat 106.209 kb on + strandat 106.209 kb on + strandat 106.209 kb on + strandat 106.209 kb on + strandat 106.210 kb on - strandat 106.210 kb on - strandat 106.210 kb on - strandat 106.210 kb on - strandat 106.386 kb on + strand, within Ac3H11_1155at 106.386 kb on + strand, within Ac3H11_1155at 106.405 kb on - strand, within Ac3H11_1155at 106.405 kb on - strand, within Ac3H11_1155at 106.524 kb on + strand, within Ac3H11_1155at 106.524 kb on + strand, within Ac3H11_1155at 106.524 kb on + strand, within Ac3H11_1155at 106.524 kb on + strand, within Ac3H11_1155at 106.524 kb on + strand, within Ac3H11_1155at 106.525 kb on - strand, within Ac3H11_1155at 106.525 kb on - strand, within Ac3H11_1155at 106.525 kb on - strand, within Ac3H11_1155at 106.525 kb on - strand, within Ac3H11_1155at 106.525 kb on - strand, within Ac3H11_1155at 106.575 kb on + strand, within Ac3H11_1155at 106.576 kb on - strand, within Ac3H11_1155at 106.636 kb on - strand, within Ac3H11_1155at 106.755 kb on + strand, within Ac3H11_1155at 106.755 kb on + strand, within Ac3H11_1155at 106.755 kb on + strand, within Ac3H11_1155at 106.755 kb on + strand, within Ac3H11_1155at 106.756 kb on - strand, within Ac3H11_1155at 106.756 kb on - strand, within Ac3H11_1155at 106.756 kb on - strand, within Ac3H11_1155at 106.756 kb on - strand, within Ac3H11_1155

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml
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104,159 + -1.1
104,159 + -1.8
104,159 + +1.6
104,159 + -2.3
104,159 + -1.2
104,159 + +1.1
104,159 + +0.5
104,159 + -1.6
104,159 + -2.2
104,160 - -0.4
104,198 + Ac3H11_1152 0.18 +0.9
104,198 + Ac3H11_1152 0.18 -0.8
104,199 - Ac3H11_1152 0.18 +0.6
104,199 - Ac3H11_1152 0.18 -0.5
104,199 - Ac3H11_1152 0.18 -1.9
104,399 + +0.7
104,399 + -0.5
104,400 - +0.7
104,400 - -1.6
104,400 - -1.8
104,400 - +0.3
104,400 - -0.4
105,074 + -0.2
105,081 - -0.2
105,951 + -0.4
106,013 + +0.5
106,077 + -0.4
106,077 + -0.8
106,077 + +1.0
106,077 + -1.2
106,077 + +0.9
106,077 + -0.3
106,077 + +0.0
106,077 + -0.7
106,078 - +0.8
106,078 - -3.3
106,078 - -2.0
106,078 - -0.9
106,078 - -0.2
106,078 - -0.6
106,078 - +0.9
106,078 - -1.8
106,209 + -0.8
106,209 + +1.4
106,209 + +1.6
106,209 + +0.6
106,209 + -1.3
106,210 - -2.8
106,210 - -1.0
106,210 - +0.3
106,210 - +0.8
106,386 + Ac3H11_1155 0.16 +0.3
106,386 + Ac3H11_1155 0.16 +0.7
106,405 - Ac3H11_1155 0.17 -1.6
106,405 - Ac3H11_1155 0.17 +0.2
106,524 + Ac3H11_1155 0.23 -1.3
106,524 + Ac3H11_1155 0.23 -1.6
106,524 + Ac3H11_1155 0.23 +0.6
106,524 + Ac3H11_1155 0.23 -0.3
106,524 + Ac3H11_1155 0.23 -0.6
106,525 - Ac3H11_1155 0.23 -1.8
106,525 - Ac3H11_1155 0.23 +0.7
106,525 - Ac3H11_1155 0.23 +0.4
106,525 - Ac3H11_1155 0.23 +1.0
106,525 - Ac3H11_1155 0.23 -1.8
106,575 + Ac3H11_1155 0.26 -0.0
106,576 - Ac3H11_1155 0.26 -0.0
106,636 - Ac3H11_1155 0.29 -1.9
106,755 + Ac3H11_1155 0.35 +0.2
106,755 + Ac3H11_1155 0.35 +0.7
106,755 + Ac3H11_1155 0.35 +0.0
106,755 + Ac3H11_1155 0.35 -0.5
106,756 - Ac3H11_1155 0.35 +0.8
106,756 - Ac3H11_1155 0.35 -1.1
106,756 - Ac3H11_1155 0.35 +1.1
106,756 - Ac3H11_1155 0.35 +0.9

Or see this region's nucleotide sequence