Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1150 and Ac3H11_1151 are separated by 618 nucleotides Ac3H11_1151 and Ac3H11_1152 overlap by 2 nucleotides Ac3H11_1152 and Ac3H11_1153 are separated by 109 nucleotides Ac3H11_1153 and Ac3H11_1154 overlap by 17 nucleotides
Ac3H11_1150 - Major facilitator family transporter, at 102,160 to 103,407
_1150
Ac3H11_1151 - hypothetical protein, at 104,026 to 104,154
_1151
Ac3H11_1152 - hypothetical protein, at 104,153 to 104,401
_1152
Ac3H11_1153 - hypothetical protein, at 104,511 to 105,059
_1153
Ac3H11_1154 - hypothetical protein, at 105,043 to 105,876
_1154
Position (kb) 104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.160 kb on + strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.161 kb on - strand, within Ac3H11_1150 at 103.479 kb on + strand at 103.479 kb on + strand at 103.565 kb on + strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.566 kb on - strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.570 kb on + strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.571 kb on - strand at 103.643 kb on - strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.927 kb on + strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 103.928 kb on - strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.159 kb on + strand at 104.160 kb on - strand at 104.198 kb on + strand, within Ac3H11_1152 at 104.198 kb on + strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.199 kb on - strand, within Ac3H11_1152 at 104.399 kb on + strand at 104.399 kb on + strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 104.400 kb on - strand at 105.074 kb on + strand at 105.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 103,160 + Ac3H11_1150 0.80 -1.3 103,160 + Ac3H11_1150 0.80 -0.6 103,160 + Ac3H11_1150 0.80 -1.2 103,160 + Ac3H11_1150 0.80 -2.6 103,160 + Ac3H11_1150 0.80 -0.1 103,160 + Ac3H11_1150 0.80 +0.6 103,161 - Ac3H11_1150 0.80 -1.6 103,161 - Ac3H11_1150 0.80 +0.6 103,161 - Ac3H11_1150 0.80 +0.7 103,161 - Ac3H11_1150 0.80 +0.4 103,479 + -0.1 103,479 + +0.3 103,565 + +0.4 103,566 - +0.6 103,566 - +0.9 103,566 - -1.9 103,566 - -0.6 103,570 + +0.2 103,570 + -0.2 103,570 + -0.9 103,570 + -0.5 103,570 + +0.8 103,570 + +1.0 103,571 - -0.6 103,571 - -0.8 103,571 - -1.1 103,571 - +0.2 103,571 - +0.8 103,571 - -2.6 103,571 - +0.1 103,571 - -2.8 103,643 - +0.8 103,927 + -1.1 103,927 + -0.6 103,927 + -0.0 103,927 + +0.4 103,927 + -0.4 103,927 + -2.9 103,927 + -0.0 103,927 + +0.8 103,927 + +1.4 103,927 + +1.5 103,927 + +0.4 103,928 - -0.4 103,928 - +1.7 103,928 - -0.8 103,928 - +0.6 103,928 - +0.6 103,928 - +0.1 104,159 + -1.1 104,159 + -1.8 104,159 + +1.6 104,159 + -2.3 104,159 + -1.2 104,159 + +1.1 104,159 + +0.5 104,159 + -1.6 104,159 + -2.2 104,160 - -0.4 104,198 + Ac3H11_1152 0.18 +0.9 104,198 + Ac3H11_1152 0.18 -0.8 104,199 - Ac3H11_1152 0.18 +0.6 104,199 - Ac3H11_1152 0.18 -0.5 104,199 - Ac3H11_1152 0.18 -1.9 104,399 + +0.7 104,399 + -0.5 104,400 - +0.7 104,400 - -1.6 104,400 - -1.8 104,400 - +0.3 104,400 - -0.4 105,074 + -0.2 105,081 - -0.2
Or see this region's nucleotide sequence