Experiment: Sisomicin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_101 and Ac3H11_102 are separated by 34 nucleotides Ac3H11_102 and Ac3H11_103 are separated by 1 nucleotides
Ac3H11_101 - Benzoate transport, extracellular ligand-binding receptor, at 104,825 to 105,994
_101
Ac3H11_102 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 106,029 to 106,910
_102
Ac3H11_103 - Benzoate transport, inner-membrane translocator precursor, at 106,912 to 107,961
_103
Position (kb)
106
107 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 105.036 kb on - strand, within Ac3H11_101 at 105.266 kb on - strand, within Ac3H11_101 at 105.266 kb on - strand, within Ac3H11_101 at 105.266 kb on - strand, within Ac3H11_101 at 105.326 kb on + strand, within Ac3H11_101 at 105.327 kb on - strand, within Ac3H11_101 at 105.327 kb on - strand, within Ac3H11_101 at 105.443 kb on + strand, within Ac3H11_101 at 105.443 kb on + strand, within Ac3H11_101 at 105.443 kb on + strand, within Ac3H11_101 at 105.444 kb on - strand, within Ac3H11_101 at 105.491 kb on + strand, within Ac3H11_101 at 105.492 kb on - strand, within Ac3H11_101 at 105.492 kb on - strand, within Ac3H11_101 at 105.653 kb on + strand, within Ac3H11_101 at 105.749 kb on + strand, within Ac3H11_101 at 105.749 kb on + strand, within Ac3H11_101 at 105.750 kb on - strand, within Ac3H11_101 at 105.750 kb on - strand, within Ac3H11_101 at 105.767 kb on + strand, within Ac3H11_101 at 106.029 kb on - strand at 106.048 kb on + strand at 106.049 kb on - strand at 106.167 kb on + strand, within Ac3H11_102 at 106.167 kb on + strand, within Ac3H11_102 at 106.174 kb on + strand, within Ac3H11_102 at 106.182 kb on + strand, within Ac3H11_102 at 106.182 kb on + strand, within Ac3H11_102 at 106.182 kb on + strand, within Ac3H11_102 at 106.182 kb on + strand, within Ac3H11_102 at 106.183 kb on - strand, within Ac3H11_102 at 106.183 kb on - strand, within Ac3H11_102 at 106.458 kb on + strand, within Ac3H11_102 at 106.557 kb on + strand, within Ac3H11_102 at 106.557 kb on + strand, within Ac3H11_102 at 106.606 kb on - strand, within Ac3H11_102 at 106.671 kb on + strand, within Ac3H11_102 at 106.672 kb on - strand, within Ac3H11_102 at 106.809 kb on + strand, within Ac3H11_102 at 106.810 kb on - strand, within Ac3H11_102 at 106.810 kb on - strand, within Ac3H11_102 at 107.077 kb on + strand, within Ac3H11_103 at 107.197 kb on + strand, within Ac3H11_103 at 107.197 kb on + strand, within Ac3H11_103 at 107.197 kb on + strand, within Ac3H11_103 at 107.198 kb on - strand, within Ac3H11_103 at 107.198 kb on - strand, within Ac3H11_103 at 107.198 kb on - strand, within Ac3H11_103 at 107.198 kb on - strand, within Ac3H11_103 at 107.323 kb on + strand, within Ac3H11_103 at 107.324 kb on - strand, within Ac3H11_103 at 107.374 kb on + strand, within Ac3H11_103 at 107.375 kb on - strand, within Ac3H11_103 at 107.518 kb on + strand, within Ac3H11_103 at 107.608 kb on + strand, within Ac3H11_103 at 107.609 kb on - strand, within Ac3H11_103 at 107.763 kb on + strand, within Ac3H11_103 at 107.764 kb on - strand, within Ac3H11_103 at 107.776 kb on + strand, within Ac3H11_103 at 107.776 kb on + strand, within Ac3H11_103
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.001 mg/ml remove 105,036 - Ac3H11_101 0.18 +1.1 105,266 - Ac3H11_101 0.38 +0.5 105,266 - Ac3H11_101 0.38 -0.2 105,266 - Ac3H11_101 0.38 -0.9 105,326 + Ac3H11_101 0.43 -0.7 105,327 - Ac3H11_101 0.43 -1.1 105,327 - Ac3H11_101 0.43 +1.1 105,443 + Ac3H11_101 0.53 +0.3 105,443 + Ac3H11_101 0.53 -1.0 105,443 + Ac3H11_101 0.53 +0.5 105,444 - Ac3H11_101 0.53 +2.0 105,491 + Ac3H11_101 0.57 +0.9 105,492 - Ac3H11_101 0.57 +1.7 105,492 - Ac3H11_101 0.57 -0.3 105,653 + Ac3H11_101 0.71 -3.3 105,749 + Ac3H11_101 0.79 +1.5 105,749 + Ac3H11_101 0.79 -0.8 105,750 - Ac3H11_101 0.79 -1.9 105,750 - Ac3H11_101 0.79 -0.0 105,767 + Ac3H11_101 0.81 -2.6 106,029 - +1.3 106,048 + +0.0 106,049 - -1.5 106,167 + Ac3H11_102 0.16 -0.3 106,167 + Ac3H11_102 0.16 -0.7 106,174 + Ac3H11_102 0.16 -0.5 106,182 + Ac3H11_102 0.17 +1.5 106,182 + Ac3H11_102 0.17 +1.4 106,182 + Ac3H11_102 0.17 +0.9 106,182 + Ac3H11_102 0.17 +1.3 106,183 - Ac3H11_102 0.17 +0.7 106,183 - Ac3H11_102 0.17 -1.9 106,458 + Ac3H11_102 0.49 -0.8 106,557 + Ac3H11_102 0.60 -1.7 106,557 + Ac3H11_102 0.60 -0.9 106,606 - Ac3H11_102 0.65 +0.7 106,671 + Ac3H11_102 0.73 +0.2 106,672 - Ac3H11_102 0.73 -2.1 106,809 + Ac3H11_102 0.88 +0.5 106,810 - Ac3H11_102 0.89 +1.6 106,810 - Ac3H11_102 0.89 +0.4 107,077 + Ac3H11_103 0.16 -0.7 107,197 + Ac3H11_103 0.27 -0.5 107,197 + Ac3H11_103 0.27 +1.2 107,197 + Ac3H11_103 0.27 -2.9 107,198 - Ac3H11_103 0.27 -0.1 107,198 - Ac3H11_103 0.27 +1.0 107,198 - Ac3H11_103 0.27 -0.4 107,198 - Ac3H11_103 0.27 +1.2 107,323 + Ac3H11_103 0.39 -1.2 107,324 - Ac3H11_103 0.39 +1.1 107,374 + Ac3H11_103 0.44 -0.4 107,375 - Ac3H11_103 0.44 -2.4 107,518 + Ac3H11_103 0.58 -0.0 107,608 + Ac3H11_103 0.66 -2.4 107,609 - Ac3H11_103 0.66 +1.8 107,763 + Ac3H11_103 0.81 -0.7 107,764 - Ac3H11_103 0.81 +1.0 107,776 + Ac3H11_103 0.82 +0.4 107,776 + Ac3H11_103 0.82 +0.0
Or see this region's nucleotide sequence