Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27285 and AZOBR_RS27290 overlap by 4 nucleotides AZOBR_RS27290 and AZOBR_RS27295 are separated by 104 nucleotides AZOBR_RS27295 and AZOBR_RS27300 are separated by 608 nucleotides
AZOBR_RS27285: AZOBR_RS27285 - sugar ABC transporter substrate-binding protein, at 264,957 to 265,682
_RS27285
AZOBR_RS27290: AZOBR_RS27290 - glycosyl transferase, at 265,679 to 266,491
_RS27290
AZOBR_RS27295: AZOBR_RS27295 - hypothetical protein, at 266,596 to 267,804
_RS27295
AZOBR_RS27300: AZOBR_RS27300 - hypothetical protein, at 268,413 to 268,670
_RS27300
Position (kb) 266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 265.811 kb on + strand, within AZOBR_RS27290 at 265.812 kb on - strand, within AZOBR_RS27290 at 265.883 kb on + strand, within AZOBR_RS27290 at 266.629 kb on + strand at 266.629 kb on + strand at 266.630 kb on - strand at 266.630 kb on - strand at 266.630 kb on - strand at 266.630 kb on - strand at 266.653 kb on + strand at 266.701 kb on + strand at 266.701 kb on + strand at 266.758 kb on + strand, within AZOBR_RS27295 at 266.857 kb on + strand, within AZOBR_RS27295 at 266.857 kb on + strand, within AZOBR_RS27295 at 266.858 kb on - strand, within AZOBR_RS27295 at 266.858 kb on - strand, within AZOBR_RS27295 at 266.858 kb on - strand, within AZOBR_RS27295 at 266.858 kb on - strand, within AZOBR_RS27295 at 266.989 kb on + strand, within AZOBR_RS27295 at 266.990 kb on - strand, within AZOBR_RS27295 at 266.990 kb on - strand, within AZOBR_RS27295 at 267.025 kb on + strand, within AZOBR_RS27295 at 267.025 kb on + strand, within AZOBR_RS27295 at 267.026 kb on - strand, within AZOBR_RS27295 at 267.026 kb on - strand, within AZOBR_RS27295 at 267.026 kb on - strand, within AZOBR_RS27295 at 267.026 kb on - strand, within AZOBR_RS27295 at 267.026 kb on - strand, within AZOBR_RS27295 at 267.089 kb on - strand, within AZOBR_RS27295 at 267.172 kb on + strand, within AZOBR_RS27295 at 267.304 kb on + strand, within AZOBR_RS27295 at 267.304 kb on + strand, within AZOBR_RS27295 at 267.305 kb on - strand, within AZOBR_RS27295 at 267.490 kb on + strand, within AZOBR_RS27295 at 267.565 kb on + strand, within AZOBR_RS27295 at 267.566 kb on - strand, within AZOBR_RS27295 at 267.637 kb on + strand, within AZOBR_RS27295 at 267.638 kb on - strand, within AZOBR_RS27295 at 267.638 kb on - strand, within AZOBR_RS27295 at 267.638 kb on - strand, within AZOBR_RS27295 at 267.670 kb on + strand, within AZOBR_RS27295 at 267.670 kb on + strand, within AZOBR_RS27295 at 267.670 kb on + strand, within AZOBR_RS27295 at 267.671 kb on - strand, within AZOBR_RS27295 at 267.671 kb on - strand, within AZOBR_RS27295 at 267.671 kb on - strand, within AZOBR_RS27295 at 267.725 kb on - strand at 267.868 kb on - strand at 268.031 kb on + strand at 268.031 kb on + strand at 268.032 kb on - strand at 268.032 kb on - strand at 268.032 kb on - strand at 268.032 kb on - strand at 268.053 kb on + strand at 268.056 kb on + strand at 268.755 kb on + strand at 268.755 kb on + strand at 268.756 kb on - strand at 268.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 265,811 + AZOBR_RS27290 0.16 +0.2 265,812 - AZOBR_RS27290 0.16 +0.9 265,883 + AZOBR_RS27290 0.25 +0.9 266,629 + -0.2 266,629 + -0.6 266,630 - -0.5 266,630 - -0.4 266,630 - +0.0 266,630 - -0.0 266,653 + -0.4 266,701 + +0.3 266,701 + -0.1 266,758 + AZOBR_RS27295 0.13 +0.3 266,857 + AZOBR_RS27295 0.22 -0.1 266,857 + AZOBR_RS27295 0.22 -0.2 266,858 - AZOBR_RS27295 0.22 +0.1 266,858 - AZOBR_RS27295 0.22 +0.5 266,858 - AZOBR_RS27295 0.22 -0.5 266,858 - AZOBR_RS27295 0.22 +0.3 266,989 + AZOBR_RS27295 0.33 -0.6 266,990 - AZOBR_RS27295 0.33 +0.0 266,990 - AZOBR_RS27295 0.33 +0.2 267,025 + AZOBR_RS27295 0.35 +0.3 267,025 + AZOBR_RS27295 0.35 +0.8 267,026 - AZOBR_RS27295 0.36 +1.5 267,026 - AZOBR_RS27295 0.36 +0.5 267,026 - AZOBR_RS27295 0.36 +0.3 267,026 - AZOBR_RS27295 0.36 +3.3 267,026 - AZOBR_RS27295 0.36 +0.5 267,089 - AZOBR_RS27295 0.41 -1.8 267,172 + AZOBR_RS27295 0.48 +0.3 267,304 + AZOBR_RS27295 0.59 +1.6 267,304 + AZOBR_RS27295 0.59 -1.0 267,305 - AZOBR_RS27295 0.59 -0.3 267,490 + AZOBR_RS27295 0.74 +0.1 267,565 + AZOBR_RS27295 0.80 +0.7 267,566 - AZOBR_RS27295 0.80 -0.0 267,637 + AZOBR_RS27295 0.86 +1.0 267,638 - AZOBR_RS27295 0.86 +1.1 267,638 - AZOBR_RS27295 0.86 +0.3 267,638 - AZOBR_RS27295 0.86 +1.2 267,670 + AZOBR_RS27295 0.89 +0.3 267,670 + AZOBR_RS27295 0.89 -0.3 267,670 + AZOBR_RS27295 0.89 -3.0 267,671 - AZOBR_RS27295 0.89 +1.1 267,671 - AZOBR_RS27295 0.89 +0.7 267,671 - AZOBR_RS27295 0.89 +0.4 267,725 - -1.7 267,868 - +0.7 268,031 + -3.2 268,031 + -0.0 268,032 - -0.6 268,032 - +0.4 268,032 - -1.7 268,032 - +2.2 268,053 + -1.0 268,056 + -1.5 268,755 + -0.1 268,755 + +0.0 268,756 - +0.9 268,756 - -0.8
Or see this region's nucleotide sequence