Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26015

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26015 and AZOBR_RS26020 are separated by 380 nucleotidesAZOBR_RS26020 and AZOBR_RS26025 are separated by 22 nucleotides AZOBR_RS26015: AZOBR_RS26015 - hypothetical protein, at 888,176 to 888,523 _RS26015 AZOBR_RS26020: AZOBR_RS26020 - hypothetical protein, at 888,904 to 889,401 _RS26020 AZOBR_RS26025: AZOBR_RS26025 - alpha gluctosidase galactosidase, at 889,424 to 890,719 _RS26025 Position (kb) 888 889Strain fitness (log2 ratio) -2 -1 0 1at 887.396 kb on + strandat 887.396 kb on + strandat 887.396 kb on + strandat 887.396 kb on + strandat 887.396 kb on + strandat 887.397 kb on - strandat 887.397 kb on - strandat 887.397 kb on - strandat 887.529 kb on - strandat 887.829 kb on - strandat 887.929 kb on + strandat 887.929 kb on + strandat 887.930 kb on - strandat 887.930 kb on - strandat 887.930 kb on - strandat 887.974 kb on + strandat 888.035 kb on + strandat 888.036 kb on - strandat 888.036 kb on - strandat 888.465 kb on + strand, within AZOBR_RS26015at 888.465 kb on + strand, within AZOBR_RS26015at 888.466 kb on - strand, within AZOBR_RS26015at 888.466 kb on - strand, within AZOBR_RS26015at 888.490 kb on + strandat 888.529 kb on - strandat 888.529 kb on - strandat 888.596 kb on + strandat 888.596 kb on + strandat 888.596 kb on + strandat 888.597 kb on - strandat 888.597 kb on - strandat 888.637 kb on + strandat 888.637 kb on + strandat 888.638 kb on - strandat 888.638 kb on - strandat 888.696 kb on + strandat 888.696 kb on + strandat 888.751 kb on - strandat 888.777 kb on + strandat 888.777 kb on + strandat 888.778 kb on - strandat 888.784 kb on - strandat 888.805 kb on + strandat 888.944 kb on - strandat 889.425 kb on + strandat 889.425 kb on + strandat 889.426 kb on - strandat 889.426 kb on - strandat 889.443 kb on + strandat 889.444 kb on - strandat 889.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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887,396 + -0.3
887,396 + -0.2
887,396 + +0.1
887,396 + -1.6
887,396 + -1.2
887,397 - -1.4
887,397 - +0.6
887,397 - -0.5
887,529 - -0.4
887,829 - +0.4
887,929 + +0.7
887,929 + -0.2
887,930 - -1.5
887,930 - -1.9
887,930 - -0.8
887,974 + -1.0
888,035 + -0.4
888,036 - +0.8
888,036 - -0.8
888,465 + AZOBR_RS26015 0.83 +0.1
888,465 + AZOBR_RS26015 0.83 +1.3
888,466 - AZOBR_RS26015 0.83 +1.0
888,466 - AZOBR_RS26015 0.83 +1.1
888,490 + -1.3
888,529 - -0.7
888,529 - -0.5
888,596 + -0.0
888,596 + -1.2
888,596 + -0.8
888,597 - -0.7
888,597 - +0.4
888,637 + +0.7
888,637 + +0.4
888,638 - -0.8
888,638 - -0.2
888,696 + -0.1
888,696 + -0.0
888,751 - -0.6
888,777 + -0.2
888,777 + +0.7
888,778 - -0.3
888,784 - -0.7
888,805 + +0.3
888,944 - -1.4
889,425 + +0.6
889,425 + -0.2
889,426 - +0.6
889,426 - +0.9
889,443 + -0.8
889,444 - -1.2
889,444 - +0.7

Or see this region's nucleotide sequence