Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25585

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25580 and AZOBR_RS25585 overlap by 7 nucleotidesAZOBR_RS25585 and AZOBR_RS25590 are separated by 4 nucleotidesAZOBR_RS25590 and AZOBR_RS25595 are separated by 4 nucleotides AZOBR_RS25580: AZOBR_RS25580 - ABC transporter substrate-binding protein, at 787,597 to 788,880 _RS25580 AZOBR_RS25585: AZOBR_RS25585 - ABC transporter permease, at 788,874 to 789,779 _RS25585 AZOBR_RS25590: AZOBR_RS25590 - sugar ABC transporter permease, at 789,784 to 790,617 _RS25590 AZOBR_RS25595: AZOBR_RS25595 - sugar ABC transporter ATP-binding protein, at 790,622 to 791,698 _RS25595 Position (kb) 788 789 790Strain fitness (log2 ratio) -2 -1 0 1at 787.900 kb on + strand, within AZOBR_RS25580at 787.900 kb on + strand, within AZOBR_RS25580at 787.900 kb on + strand, within AZOBR_RS25580at 787.901 kb on - strand, within AZOBR_RS25580at 787.901 kb on - strand, within AZOBR_RS25580at 787.901 kb on - strand, within AZOBR_RS25580at 787.901 kb on - strand, within AZOBR_RS25580at 788.029 kb on + strand, within AZOBR_RS25580at 788.030 kb on - strand, within AZOBR_RS25580at 788.030 kb on - strand, within AZOBR_RS25580at 788.155 kb on + strand, within AZOBR_RS25580at 788.156 kb on - strand, within AZOBR_RS25580at 788.177 kb on - strand, within AZOBR_RS25580at 788.341 kb on + strand, within AZOBR_RS25580at 788.341 kb on + strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.342 kb on - strand, within AZOBR_RS25580at 788.578 kb on + strand, within AZOBR_RS25580at 788.753 kb on - strandat 788.753 kb on - strandat 788.776 kb on + strandat 788.776 kb on + strandat 788.777 kb on - strandat 788.856 kb on + strandat 789.063 kb on + strand, within AZOBR_RS25585at 789.063 kb on + strand, within AZOBR_RS25585at 789.063 kb on + strand, within AZOBR_RS25585at 789.063 kb on + strand, within AZOBR_RS25585at 789.064 kb on - strand, within AZOBR_RS25585at 789.064 kb on - strand, within AZOBR_RS25585at 789.064 kb on - strand, within AZOBR_RS25585at 789.463 kb on - strand, within AZOBR_RS25585at 789.597 kb on + strand, within AZOBR_RS25585at 789.597 kb on + strand, within AZOBR_RS25585at 789.597 kb on + strand, within AZOBR_RS25585at 789.597 kb on + strand, within AZOBR_RS25585at 789.597 kb on + strand, within AZOBR_RS25585at 789.597 kb on + strand, within AZOBR_RS25585at 789.597 kb on + strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.598 kb on - strand, within AZOBR_RS25585at 789.643 kb on - strand, within AZOBR_RS25585at 789.654 kb on + strand, within AZOBR_RS25585at 789.655 kb on - strand, within AZOBR_RS25585at 789.734 kb on - strandat 789.813 kb on - strandat 789.949 kb on + strand, within AZOBR_RS25590at 789.949 kb on + strand, within AZOBR_RS25590at 789.950 kb on - strand, within AZOBR_RS25590at 789.950 kb on - strand, within AZOBR_RS25590at 789.950 kb on - strand, within AZOBR_RS25590at 789.950 kb on - strand, within AZOBR_RS25590at 790.184 kb on - strand, within AZOBR_RS25590at 790.213 kb on + strand, within AZOBR_RS25590at 790.214 kb on - strand, within AZOBR_RS25590at 790.214 kb on - strand, within AZOBR_RS25590

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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787,900 + AZOBR_RS25580 0.24 -1.8
787,900 + AZOBR_RS25580 0.24 -0.8
787,900 + AZOBR_RS25580 0.24 -1.2
787,901 - AZOBR_RS25580 0.24 -0.2
787,901 - AZOBR_RS25580 0.24 -0.4
787,901 - AZOBR_RS25580 0.24 -0.4
787,901 - AZOBR_RS25580 0.24 +0.7
788,029 + AZOBR_RS25580 0.34 -1.0
788,030 - AZOBR_RS25580 0.34 -0.2
788,030 - AZOBR_RS25580 0.34 +0.2
788,155 + AZOBR_RS25580 0.43 +0.9
788,156 - AZOBR_RS25580 0.44 +0.1
788,177 - AZOBR_RS25580 0.45 -0.2
788,341 + AZOBR_RS25580 0.58 +0.1
788,341 + AZOBR_RS25580 0.58 -0.7
788,342 - AZOBR_RS25580 0.58 +0.8
788,342 - AZOBR_RS25580 0.58 +0.2
788,342 - AZOBR_RS25580 0.58 +0.6
788,342 - AZOBR_RS25580 0.58 +0.7
788,342 - AZOBR_RS25580 0.58 -0.4
788,578 + AZOBR_RS25580 0.76 +0.2
788,753 - -0.5
788,753 - -0.8
788,776 + +0.0
788,776 + +0.3
788,777 - -0.0
788,856 + +0.5
789,063 + AZOBR_RS25585 0.21 +0.3
789,063 + AZOBR_RS25585 0.21 -0.8
789,063 + AZOBR_RS25585 0.21 +0.7
789,063 + AZOBR_RS25585 0.21 +0.0
789,064 - AZOBR_RS25585 0.21 +1.5
789,064 - AZOBR_RS25585 0.21 -0.0
789,064 - AZOBR_RS25585 0.21 +0.5
789,463 - AZOBR_RS25585 0.65 -0.4
789,597 + AZOBR_RS25585 0.80 +1.0
789,597 + AZOBR_RS25585 0.80 +0.7
789,597 + AZOBR_RS25585 0.80 +0.2
789,597 + AZOBR_RS25585 0.80 -1.5
789,597 + AZOBR_RS25585 0.80 +0.2
789,597 + AZOBR_RS25585 0.80 +1.6
789,597 + AZOBR_RS25585 0.80 +1.2
789,598 - AZOBR_RS25585 0.80 +0.7
789,598 - AZOBR_RS25585 0.80 -0.2
789,598 - AZOBR_RS25585 0.80 +0.7
789,598 - AZOBR_RS25585 0.80 +1.4
789,598 - AZOBR_RS25585 0.80 -1.2
789,598 - AZOBR_RS25585 0.80 +0.7
789,598 - AZOBR_RS25585 0.80 -1.3
789,598 - AZOBR_RS25585 0.80 -0.1
789,598 - AZOBR_RS25585 0.80 -0.0
789,598 - AZOBR_RS25585 0.80 -0.0
789,643 - AZOBR_RS25585 0.85 -0.2
789,654 + AZOBR_RS25585 0.86 +0.0
789,655 - AZOBR_RS25585 0.86 -0.1
789,734 - -0.7
789,813 - +0.5
789,949 + AZOBR_RS25590 0.20 -0.8
789,949 + AZOBR_RS25590 0.20 +0.3
789,950 - AZOBR_RS25590 0.20 -0.0
789,950 - AZOBR_RS25590 0.20 +0.3
789,950 - AZOBR_RS25590 0.20 -2.4
789,950 - AZOBR_RS25590 0.20 +0.7
790,184 - AZOBR_RS25590 0.48 -0.0
790,213 + AZOBR_RS25590 0.51 +0.0
790,214 - AZOBR_RS25590 0.52 +0.3
790,214 - AZOBR_RS25590 0.52 +0.6

Or see this region's nucleotide sequence