Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15535 and AZOBR_RS15540 are separated by 63 nucleotides AZOBR_RS15540 and AZOBR_RS15545 are separated by 73 nucleotides AZOBR_RS15545 and AZOBR_RS15550 are separated by 205 nucleotides AZOBR_RS15550 and AZOBR_RS15555 are separated by 143 nucleotides
AZOBR_RS15535: AZOBR_RS15535 - heme biosynthesis protein HemY, at 242,485 to 242,853
_RS15535
AZOBR_RS15540: AZOBR_RS15540 - exodeoxyribonuclease III, at 242,917 to 243,702
_RS15540
AZOBR_RS15545: AZOBR_RS15545 - hypothetical protein, at 243,776 to 244,348
_RS15545
AZOBR_RS15550: AZOBR_RS15550 - tRNA-Ser, at 244,554 to 244,643
_RS15550
AZOBR_RS15555: AZOBR_RS15555 - transcriptional regulator, at 244,787 to 245,683
_RS15555
Position (kb) 243
244
245 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 243.008 kb on + strand, within AZOBR_RS15540 at 243.070 kb on + strand, within AZOBR_RS15540 at 243.071 kb on - strand, within AZOBR_RS15540 at 243.188 kb on - strand, within AZOBR_RS15540 at 243.229 kb on + strand, within AZOBR_RS15540 at 243.229 kb on + strand, within AZOBR_RS15540 at 243.230 kb on - strand, within AZOBR_RS15540 at 243.230 kb on - strand, within AZOBR_RS15540 at 243.355 kb on + strand, within AZOBR_RS15540 at 243.356 kb on - strand, within AZOBR_RS15540 at 243.508 kb on + strand, within AZOBR_RS15540 at 243.508 kb on + strand, within AZOBR_RS15540 at 243.509 kb on - strand, within AZOBR_RS15540 at 243.509 kb on - strand, within AZOBR_RS15540 at 243.523 kb on + strand, within AZOBR_RS15540 at 243.524 kb on - strand, within AZOBR_RS15540 at 244.071 kb on - strand, within AZOBR_RS15545 at 244.071 kb on - strand, within AZOBR_RS15545 at 244.071 kb on - strand, within AZOBR_RS15545 at 244.355 kb on + strand at 244.355 kb on + strand at 244.356 kb on - strand at 244.532 kb on + strand at 244.532 kb on + strand at 244.532 kb on + strand at 244.733 kb on + strand at 244.733 kb on + strand at 244.733 kb on + strand at 244.733 kb on + strand at 245.324 kb on + strand, within AZOBR_RS15555 at 245.324 kb on + strand, within AZOBR_RS15555 at 245.325 kb on - strand, within AZOBR_RS15555 at 245.325 kb on - strand, within AZOBR_RS15555
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 243,008 + AZOBR_RS15540 0.12 -1.4 243,070 + AZOBR_RS15540 0.19 +0.7 243,071 - AZOBR_RS15540 0.20 +0.5 243,188 - AZOBR_RS15540 0.34 -0.3 243,229 + AZOBR_RS15540 0.40 +3.9 243,229 + AZOBR_RS15540 0.40 +0.7 243,230 - AZOBR_RS15540 0.40 +0.2 243,230 - AZOBR_RS15540 0.40 -0.8 243,355 + AZOBR_RS15540 0.56 -1.4 243,356 - AZOBR_RS15540 0.56 -0.3 243,508 + AZOBR_RS15540 0.75 +0.9 243,508 + AZOBR_RS15540 0.75 +0.9 243,509 - AZOBR_RS15540 0.75 -0.8 243,509 - AZOBR_RS15540 0.75 +0.1 243,523 + AZOBR_RS15540 0.77 -1.8 243,524 - AZOBR_RS15540 0.77 +0.7 244,071 - AZOBR_RS15545 0.51 +1.8 244,071 - AZOBR_RS15545 0.51 +0.2 244,071 - AZOBR_RS15545 0.51 +0.8 244,355 + +0.3 244,355 + +0.9 244,356 - +0.8 244,532 + -0.1 244,532 + +0.6 244,532 + -0.2 244,733 + -0.8 244,733 + +0.7 244,733 + +0.9 244,733 + +0.4 245,324 + AZOBR_RS15555 0.60 -0.3 245,324 + AZOBR_RS15555 0.60 +0.6 245,325 - AZOBR_RS15555 0.60 +0.6 245,325 - AZOBR_RS15555 0.60 +1.3
Or see this region's nucleotide sequence