Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14490 and AZOBR_RS14495 are separated by 72 nucleotides AZOBR_RS14495 and AZOBR_RS14500 are separated by 176 nucleotides AZOBR_RS14500 and AZOBR_RS14505 are separated by 7 nucleotides AZOBR_RS14505 and AZOBR_RS14510 are separated by 11 nucleotides
AZOBR_RS14490: AZOBR_RS14490 - hypothetical protein, at 21,806 to 22,114
_RS14490
AZOBR_RS14495: AZOBR_RS14495 - hypothetical protein, at 22,187 to 22,606
_RS14495
AZOBR_RS14500: AZOBR_RS14500 - nucleoside triphosphate pyrophosphohydrolase, at 22,783 to 23,592
_RS14500
AZOBR_RS14505: AZOBR_RS14505 - hydrogenase, at 23,600 to 24,121
_RS14505
AZOBR_RS14510: AZOBR_RS14510 - hydrogenase expression protein HypE, at 24,133 to 25,674
_RS14510
Position (kb) 22
23
24 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.794 kb on + strand at 21.795 kb on - strand at 21.795 kb on - strand at 21.796 kb on + strand at 21.797 kb on - strand at 21.797 kb on - strand at 22.201 kb on + strand at 22.201 kb on + strand at 22.202 kb on - strand at 22.427 kb on + strand, within AZOBR_RS14495 at 22.457 kb on + strand, within AZOBR_RS14495 at 22.457 kb on + strand, within AZOBR_RS14495 at 22.458 kb on - strand, within AZOBR_RS14495 at 22.739 kb on - strand at 22.870 kb on + strand, within AZOBR_RS14500 at 22.870 kb on + strand, within AZOBR_RS14500 at 22.871 kb on - strand, within AZOBR_RS14500 at 22.906 kb on + strand, within AZOBR_RS14500 at 22.906 kb on + strand, within AZOBR_RS14500 at 22.907 kb on - strand, within AZOBR_RS14500 at 22.907 kb on - strand, within AZOBR_RS14500 at 22.987 kb on + strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.988 kb on - strand, within AZOBR_RS14500 at 22.991 kb on - strand, within AZOBR_RS14500 at 22.991 kb on - strand, within AZOBR_RS14500 at 23.725 kb on - strand, within AZOBR_RS14505 at 23.913 kb on + strand, within AZOBR_RS14505 at 24.134 kb on + strand at 24.134 kb on + strand at 24.134 kb on + strand at 24.134 kb on + strand at 24.135 kb on - strand at 24.153 kb on - strand at 24.524 kb on + strand, within AZOBR_RS14510
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 21,794 + +0.5 21,794 + -0.4 21,794 + +1.0 21,794 + -1.0 21,794 + -0.4 21,794 + +0.3 21,795 - +0.9 21,795 - -0.1 21,796 + -0.1 21,797 - -1.0 21,797 - -0.4 22,201 + -0.0 22,201 + +0.7 22,202 - -1.1 22,427 + AZOBR_RS14495 0.57 -0.1 22,457 + AZOBR_RS14495 0.64 -0.0 22,457 + AZOBR_RS14495 0.64 +0.4 22,458 - AZOBR_RS14495 0.65 +0.4 22,739 - -4.2 22,870 + AZOBR_RS14500 0.11 +0.8 22,870 + AZOBR_RS14500 0.11 +0.3 22,871 - AZOBR_RS14500 0.11 +0.6 22,906 + AZOBR_RS14500 0.15 -0.6 22,906 + AZOBR_RS14500 0.15 -0.3 22,907 - AZOBR_RS14500 0.15 +0.0 22,907 - AZOBR_RS14500 0.15 -1.4 22,987 + AZOBR_RS14500 0.25 +0.6 22,988 - AZOBR_RS14500 0.25 +0.8 22,988 - AZOBR_RS14500 0.25 -0.5 22,988 - AZOBR_RS14500 0.25 -1.6 22,991 - AZOBR_RS14500 0.26 +0.3 22,991 - AZOBR_RS14500 0.26 +0.1 23,725 - AZOBR_RS14505 0.24 -0.2 23,913 + AZOBR_RS14505 0.60 +0.2 24,134 + +1.5 24,134 + -1.6 24,134 + +0.1 24,134 + -1.0 24,135 - +0.0 24,153 - +0.4 24,524 + AZOBR_RS14510 0.25 +0.2
Or see this region's nucleotide sequence