Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05895

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05885 and AZOBR_RS05890 overlap by 4 nucleotidesAZOBR_RS05890 and AZOBR_RS05895 are separated by 35 nucleotidesAZOBR_RS05895 and AZOBR_RS05900 are separated by 291 nucleotidesAZOBR_RS05900 and AZOBR_RS05905 overlap by 7 nucleotides AZOBR_RS05885: AZOBR_RS05885 - hypothetical protein, at 1,249,640 to 1,250,398 _RS05885 AZOBR_RS05890: AZOBR_RS05890 - 4-carboxymuconolactone decarboxylase, at 1,250,395 to 1,250,802 _RS05890 AZOBR_RS05895: AZOBR_RS05895 - hypothetical protein, at 1,250,838 to 1,251,209 _RS05895 AZOBR_RS05900: AZOBR_RS05900 - hypothetical protein, at 1,251,501 to 1,251,776 _RS05900 AZOBR_RS05905: AZOBR_RS05905 - putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase), at 1,251,770 to 1,252,561 _RS05905 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1250.413 kb on + strandat 1250.413 kb on + strandat 1250.414 kb on - strandat 1250.414 kb on - strandat 1250.414 kb on - strandat 1250.498 kb on + strand, within AZOBR_RS05890at 1250.663 kb on + strand, within AZOBR_RS05890at 1250.663 kb on + strand, within AZOBR_RS05890at 1250.663 kb on + strand, within AZOBR_RS05890at 1250.663 kb on + strand, within AZOBR_RS05890at 1250.663 kb on + strand, within AZOBR_RS05890at 1250.663 kb on + strand, within AZOBR_RS05890at 1250.663 kb on + strand, within AZOBR_RS05890at 1250.664 kb on - strand, within AZOBR_RS05890at 1250.845 kb on + strandat 1250.846 kb on - strandat 1250.846 kb on - strandat 1250.884 kb on + strand, within AZOBR_RS05895at 1250.885 kb on - strand, within AZOBR_RS05895at 1250.944 kb on + strand, within AZOBR_RS05895at 1251.013 kb on + strand, within AZOBR_RS05895at 1251.013 kb on + strand, within AZOBR_RS05895at 1251.014 kb on - strand, within AZOBR_RS05895at 1251.014 kb on - strand, within AZOBR_RS05895at 1251.014 kb on - strand, within AZOBR_RS05895at 1251.014 kb on - strand, within AZOBR_RS05895at 1251.058 kb on + strand, within AZOBR_RS05895at 1251.058 kb on + strand, within AZOBR_RS05895at 1251.059 kb on - strand, within AZOBR_RS05895at 1251.086 kb on - strand, within AZOBR_RS05895at 1251.424 kb on + strandat 1251.424 kb on + strandat 1251.424 kb on + strandat 1251.424 kb on + strandat 1251.424 kb on + strandat 1251.425 kb on - strandat 1251.425 kb on - strandat 1251.425 kb on - strandat 1251.535 kb on + strand, within AZOBR_RS05900at 1251.535 kb on + strand, within AZOBR_RS05900at 1251.536 kb on - strand, within AZOBR_RS05900at 1251.536 kb on - strand, within AZOBR_RS05900at 1251.780 kb on + strandat 1251.780 kb on + strandat 1251.780 kb on + strandat 1251.781 kb on - strandat 1251.781 kb on - strandat 1251.781 kb on - strandat 1251.781 kb on - strandat 1251.781 kb on - strandat 1251.781 kb on - strandat 1251.781 kb on - strandat 1252.050 kb on + strand, within AZOBR_RS05905at 1252.051 kb on - strand, within AZOBR_RS05905

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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1,250,413 + +0.5
1,250,413 + +0.2
1,250,414 - +0.7
1,250,414 - -0.8
1,250,414 - +0.5
1,250,498 + AZOBR_RS05890 0.25 +0.1
1,250,663 + AZOBR_RS05890 0.66 -0.7
1,250,663 + AZOBR_RS05890 0.66 +0.2
1,250,663 + AZOBR_RS05890 0.66 +1.0
1,250,663 + AZOBR_RS05890 0.66 -1.7
1,250,663 + AZOBR_RS05890 0.66 +0.1
1,250,663 + AZOBR_RS05890 0.66 +0.2
1,250,663 + AZOBR_RS05890 0.66 -0.4
1,250,664 - AZOBR_RS05890 0.66 -3.0
1,250,845 + +0.8
1,250,846 - +0.3
1,250,846 - +0.8
1,250,884 + AZOBR_RS05895 0.12 -0.8
1,250,885 - AZOBR_RS05895 0.13 -0.5
1,250,944 + AZOBR_RS05895 0.28 +0.3
1,251,013 + AZOBR_RS05895 0.47 -0.3
1,251,013 + AZOBR_RS05895 0.47 +0.4
1,251,014 - AZOBR_RS05895 0.47 -0.2
1,251,014 - AZOBR_RS05895 0.47 +0.5
1,251,014 - AZOBR_RS05895 0.47 -0.3
1,251,014 - AZOBR_RS05895 0.47 -0.4
1,251,058 + AZOBR_RS05895 0.59 -0.5
1,251,058 + AZOBR_RS05895 0.59 -0.1
1,251,059 - AZOBR_RS05895 0.59 -0.4
1,251,086 - AZOBR_RS05895 0.67 -1.5
1,251,424 + -0.3
1,251,424 + -0.2
1,251,424 + -0.2
1,251,424 + +0.5
1,251,424 + -0.4
1,251,425 - +0.1
1,251,425 - +0.7
1,251,425 - -1.6
1,251,535 + AZOBR_RS05900 0.12 +0.5
1,251,535 + AZOBR_RS05900 0.12 +1.6
1,251,536 - AZOBR_RS05900 0.13 +0.1
1,251,536 - AZOBR_RS05900 0.13 +2.8
1,251,780 + +0.2
1,251,780 + -0.0
1,251,780 + +0.0
1,251,781 - -0.3
1,251,781 - -3.4
1,251,781 - +1.7
1,251,781 - -0.8
1,251,781 - -0.1
1,251,781 - -0.6
1,251,781 - +0.7
1,252,050 + AZOBR_RS05905 0.35 +1.2
1,252,051 - AZOBR_RS05905 0.35 +0.3

Or see this region's nucleotide sequence