Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04395 and AZOBR_RS04400 are separated by 84 nucleotides AZOBR_RS04400 and AZOBR_RS04405 are separated by 135 nucleotides AZOBR_RS04405 and AZOBR_RS04410 are separated by 71 nucleotides AZOBR_RS04410 and AZOBR_RS04415 are separated by 91 nucleotides
AZOBR_RS04395: AZOBR_RS04395 - hypothetical protein, at 923,681 to 924,106
_RS04395
AZOBR_RS04400: AZOBR_RS04400 - DNA repair protein RadC, at 924,191 to 924,907
_RS04400
AZOBR_RS04405: AZOBR_RS04405 - methionine aminopeptidase, at 925,043 to 925,876
_RS04405
AZOBR_RS04410: AZOBR_RS04410 - XRE family transcriptional regulator, at 925,948 to 926,676
_RS04410
AZOBR_RS04415: AZOBR_RS04415 - molybdenum cofactor biosynthesis protein, at 926,768 to 927,550
_RS04415
Position (kb) 925
926 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 924.139 kb on + strand at 924.139 kb on + strand at 924.139 kb on + strand at 924.139 kb on + strand at 924.140 kb on - strand at 924.531 kb on + strand, within AZOBR_RS04400 at 924.531 kb on + strand, within AZOBR_RS04400 at 924.532 kb on - strand, within AZOBR_RS04400 at 924.843 kb on + strand at 924.844 kb on - strand at 924.844 kb on - strand at 924.844 kb on - strand at 924.844 kb on - strand at 925.041 kb on + strand at 925.042 kb on - strand at 925.046 kb on + strand at 925.047 kb on - strand at 925.047 kb on - strand at 925.470 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.521 kb on + strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.522 kb on - strand, within AZOBR_RS04405 at 925.761 kb on + strand, within AZOBR_RS04405 at 925.761 kb on + strand, within AZOBR_RS04405 at 925.762 kb on - strand, within AZOBR_RS04405 at 925.762 kb on - strand, within AZOBR_RS04405 at 925.891 kb on - strand at 925.940 kb on + strand at 925.940 kb on + strand at 926.004 kb on + strand at 926.004 kb on + strand at 926.005 kb on - strand at 926.005 kb on - strand at 926.063 kb on + strand, within AZOBR_RS04410 at 926.064 kb on - strand, within AZOBR_RS04410 at 926.064 kb on - strand, within AZOBR_RS04410 at 926.123 kb on + strand, within AZOBR_RS04410 at 926.123 kb on + strand, within AZOBR_RS04410 at 926.123 kb on + strand, within AZOBR_RS04410 at 926.124 kb on - strand, within AZOBR_RS04410 at 926.124 kb on - strand, within AZOBR_RS04410 at 926.273 kb on + strand, within AZOBR_RS04410 at 926.273 kb on + strand, within AZOBR_RS04410 at 926.274 kb on - strand, within AZOBR_RS04410 at 926.274 kb on - strand, within AZOBR_RS04410 at 926.331 kb on - strand, within AZOBR_RS04410 at 926.331 kb on - strand, within AZOBR_RS04410 at 926.484 kb on + strand, within AZOBR_RS04410 at 926.485 kb on - strand, within AZOBR_RS04410 at 926.686 kb on + strand at 926.686 kb on + strand at 926.687 kb on - strand at 926.853 kb on - strand, within AZOBR_RS04415
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 924,139 + -0.0 924,139 + +0.0 924,139 + -1.0 924,139 + -0.0 924,140 - +1.1 924,531 + AZOBR_RS04400 0.47 +0.4 924,531 + AZOBR_RS04400 0.47 -2.0 924,532 - AZOBR_RS04400 0.48 -0.3 924,843 + +0.1 924,844 - -0.9 924,844 - +0.9 924,844 - -0.6 924,844 - +0.6 925,041 + +0.3 925,042 - -1.4 925,046 + -1.8 925,047 - +0.9 925,047 - +0.3 925,470 + AZOBR_RS04405 0.51 -0.3 925,521 + AZOBR_RS04405 0.57 -0.3 925,521 + AZOBR_RS04405 0.57 -0.1 925,521 + AZOBR_RS04405 0.57 -2.4 925,521 + AZOBR_RS04405 0.57 -0.2 925,521 + AZOBR_RS04405 0.57 -1.0 925,521 + AZOBR_RS04405 0.57 -1.2 925,521 + AZOBR_RS04405 0.57 -0.7 925,521 + AZOBR_RS04405 0.57 -0.7 925,521 + AZOBR_RS04405 0.57 -0.6 925,521 + AZOBR_RS04405 0.57 -0.8 925,521 + AZOBR_RS04405 0.57 +0.8 925,522 - AZOBR_RS04405 0.57 -2.9 925,522 - AZOBR_RS04405 0.57 -1.5 925,522 - AZOBR_RS04405 0.57 -0.2 925,522 - AZOBR_RS04405 0.57 +0.2 925,522 - AZOBR_RS04405 0.57 -1.1 925,522 - AZOBR_RS04405 0.57 -0.7 925,522 - AZOBR_RS04405 0.57 +1.0 925,522 - AZOBR_RS04405 0.57 -2.1 925,522 - AZOBR_RS04405 0.57 -3.4 925,761 + AZOBR_RS04405 0.86 +0.0 925,761 + AZOBR_RS04405 0.86 -0.4 925,762 - AZOBR_RS04405 0.86 -0.3 925,762 - AZOBR_RS04405 0.86 -0.4 925,891 - +1.9 925,940 + -0.3 925,940 + -0.7 926,004 + -2.8 926,004 + +0.9 926,005 - +0.3 926,005 - +0.4 926,063 + AZOBR_RS04410 0.16 +1.5 926,064 - AZOBR_RS04410 0.16 +0.8 926,064 - AZOBR_RS04410 0.16 +0.0 926,123 + AZOBR_RS04410 0.24 +0.2 926,123 + AZOBR_RS04410 0.24 +0.7 926,123 + AZOBR_RS04410 0.24 -4.5 926,124 - AZOBR_RS04410 0.24 -0.3 926,124 - AZOBR_RS04410 0.24 -0.6 926,273 + AZOBR_RS04410 0.45 -1.2 926,273 + AZOBR_RS04410 0.45 +0.9 926,274 - AZOBR_RS04410 0.45 +0.6 926,274 - AZOBR_RS04410 0.45 +0.9 926,331 - AZOBR_RS04410 0.53 -1.4 926,331 - AZOBR_RS04410 0.53 -0.1 926,484 + AZOBR_RS04410 0.74 -1.6 926,485 - AZOBR_RS04410 0.74 -0.1 926,686 + -0.8 926,686 + -1.4 926,687 - -1.1 926,853 - AZOBR_RS04415 0.11 +0.1
Or see this region's nucleotide sequence