Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00550 and AZOBR_RS00555 are separated by 1 nucleotides AZOBR_RS00555 and AZOBR_RS00560 are separated by 186 nucleotides AZOBR_RS00560 and AZOBR_RS00565 are separated by 244 nucleotides
AZOBR_RS00550: AZOBR_RS00550 - histidine kinase, at 109,967 to 111,346
_RS00550
AZOBR_RS00555: AZOBR_RS00555 - chemotaxis protein CheY, at 111,348 to 112,073
_RS00555
AZOBR_RS00560: AZOBR_RS00560 - hypothetical protein, at 112,260 to 112,814
_RS00560
AZOBR_RS00565: AZOBR_RS00565 - ferredoxin--NADP reductase, at 113,059 to 114,081
_RS00565
Position (kb) 111
112
113 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 111.219 kb on + strand at 111.219 kb on + strand at 111.220 kb on - strand at 111.220 kb on - strand at 111.293 kb on - strand at 111.572 kb on - strand, within AZOBR_RS00555 at 111.763 kb on + strand, within AZOBR_RS00555 at 111.763 kb on + strand, within AZOBR_RS00555 at 112.194 kb on - strand at 112.271 kb on + strand at 112.545 kb on + strand, within AZOBR_RS00560 at 112.545 kb on + strand, within AZOBR_RS00560 at 112.546 kb on - strand, within AZOBR_RS00560 at 113.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 111,219 + +0.3 111,219 + +0.2 111,220 - -0.1 111,220 - +0.3 111,293 - +0.7 111,572 - AZOBR_RS00555 0.31 +0.6 111,763 + AZOBR_RS00555 0.57 +0.3 111,763 + AZOBR_RS00555 0.57 -2.5 112,194 - -3.8 112,271 + -0.2 112,545 + AZOBR_RS00560 0.51 -2.2 112,545 + AZOBR_RS00560 0.51 -0.8 112,546 - AZOBR_RS00560 0.52 +0.3 113,061 - -0.1
Or see this region's nucleotide sequence